Sodium in PDB, part 218 (files: 8681-8720),
PDB 6rl0-6s09
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8681-8720 (PDB 6rl0-6s09).
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6rl0 (Na: 4) - Recombinant Pseudomonas Stutzeri Nitrous Oxide Reductase, Form I
Other atoms:
K (4);
Ca (4);
Cl (4);
Cu (24);
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6rlg (Na: 2) - Crystal Structure of LDTMT2 From Mycobacterium Tuberculosis
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6rlo (Na: 7) - Crystal Structure of AT1412DM Fab Fragment in Complex with CD9 Large Extracellular Loop
Other atoms:
K (1);
Cl (11);
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6rlt (Na: 6) - Trypanosoma Brucei Seryl-Trna Synthetase in Complex with 5'-O-(N-(L- Seryl)-Sulfamoyl)Uridine
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6rlu (Na: 6) - Trypanosoma Brucei Seryl-Trna Synthetase in Complex with 5'-O-(N-(L- Seryl)-Sulfamoyl)Cytidine
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6rlv (Na: 6) - Trypanosoma Brucei Seryl-Trna Synthetase in Complex with 5'-O-(N-(L- Seryl)-Sulfamoyl)N3-Methyluridine
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6rmx (Na: 1) - Human Carbonic Anhydrase II Mutant T199V Bound By 2-[(1S)-2,3-Dihydro- 1H-Inden-1-Ylamino]-3,5,6-Trifluoro-4-[(2-Hydroxyethyl) Thio]Benzenesulfonamide
Other atoms:
F (3);
Zn (1);
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6rnb (Na: 1) - Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 50MS Diffusion Time
Other atoms:
Cl (2);
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6rnc (Na: 1) - Liquid Application Method For Time-Resolved Analyses (Lama) By Serial Synchrotron Crystallography, Lysozyme with GLCNAC3 - 100MS Diffusion Time.
Other atoms:
Cl (2);
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6rnl (Na: 1) - L-[Ru(Tap)2(Dppz)]2+ Bound to the G-Quadruplex Forming Sequence D(Tagggtt)
Other atoms:
K (2);
Ru (4);
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6ro3 (Na: 2) - 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf
Other atoms:
Re (16);
Br (1);
Cl (4);
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6ro5 (Na: 2) - 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf
Other atoms:
Re (39);
Cl (4);
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6rof (Na: 1) - Human Carbonic Anhydrase II Mutant T199V Bound By 2-(Cyclooctylamino)- 3,5,6-Trifluoro-4-[(2-Hydroxyethyl)Thio]Benzenesulfonamide
Other atoms:
F (6);
Zn (1);
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6rog (Na: 4) - Crystal Structure of the Kelch Domain of Human KEAP1
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6rot (Na: 2) - Thrombin in Complex with MI2105
Other atoms:
Cl (1);
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6rp4 (Na: 3) - Cdt of Sidd, Deampylase From Legionella Pneumophila
Other atoms:
Mg (4);
Zn (4);
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6rp6 (Na: 1) - Fragment Az-019 Binding at the TAZPS89/14-3-3 Sigma Interface
Other atoms:
Ca (1);
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6rpj (Na: 2) - A Non-Blocking Anti-Ctla-4 Nanobody Complexed with Ctla-4
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6rqx (Na: 4) - High-Resolution Crystal Structure of ERAP1 in Complex with 10MER Phosphinic Peptide
Other atoms:
Zn (1);
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6rt1 (Na: 1) - Native Tetragonal Lysozyme - Home Source Data
Other atoms:
Cl (5);
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6rt3 (Na: 1) - Native Tetragonal Lysozyme - Synchrotron Data
Other atoms:
Cl (8);
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6rta (Na: 1) - Tetragonal Lysozyme Grown with 300G/L Ficoll
Other atoms:
Cl (2);
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6rtv (Na: 1) - Crystal Structure of Glucuronoyl Esterase From Cerrena Unicolor Inactive S270A Variant
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6ru1 (Na: 1) - Crystal Structure of Glucuronoyl Esterase From Cerrena Unicolor Inactive S270A Variant in Complex with the Aldouronic Acid UM4X
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6ru2 (Na: 1) - Crystal Structure of Glucuronoyl Esterase From Cerrena Unicolor
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6ru6 (Na: 1) - Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide
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6ru7 (Na: 1) - Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide
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6ru8 (Na: 2) - Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Triple Phosphorylated P63 PAD3P Peptide
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6rw7 (Na: 1) - An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae
Other atoms:
Cu (2);
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6rwd (Na: 2) - Crystal Structure of Sjgst in Complex with Gsh and Ellagic Acid at 1.53 Angstrom Resolution
Other atoms:
Cl (2);
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6rx8 (Na: 2) - Edds Lyase Variant D290M/Y320M with Bound Fumarate
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6rxa (Na: 2) - Edds Lyase Variant D290M/Y320M with Bound Formate
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6rxi (Na: 1) - In-Flow Serial Synchrotron Crystallography Using A 3D-Printed Microfluidic Device (3D-Mixd): Lysozyme
Other atoms:
Cl (1);
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6ryf (Na: 4) - High-Resolution Crystal Structure of ERAP1 in Complex with 15MER Phosphinic Peptide
Other atoms:
Zn (1);
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6rz4 (Na: 1) - Crystal Structure of Cysteinyl Leukotriene Receptor 1 in Complex with Pranlukast
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6rz5 (Na: 2) - Xfel Crystal Structure of the Human Cysteinyl Leukotriene Receptor 1 in Complex with Zafirlukast
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6rze (Na: 3) - Crystal Structure of E. Coli Adenylate Kinase R119A Mutant
Other atoms:
Cl (2);
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6rzp (Na: 1) - Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator.
Other atoms:
Ca (1);
Cl (1);
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6s08 (Na: 1) - Crystal Structure of Properdin (Tsr Domains N1 & 456)
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6s09 (Na: 1) - C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution
Page generated: Mon Dec 15 11:15:27 2025
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