Sodium in PDB 6ru7: Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide

Enzymatic activity of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide

All present enzymatic activity of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide:
2.7.11.1; 2.7.11.26;

Protein crystallography data

The structure of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide, PDB code: 6ru7 was solved by A.Chaikuad, M.Tuppi, J.Gebel, C.H.Arrowsmith, A.M.Edwards, C.Bountra, V.Dotsch, S.Knapp, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	46.60 / 2.08
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	171.779, 48.673, 87.631, 90.00, 109.93, 90.00
*R / R_free (%)*	17.5 / 21.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide (pdb code 6ru7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide, PDB code: 6ru7:

Sodium binding site 1 out of 1 in 6ru7

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Sodium Binding Sites List in 6ru7

Sodium binding site 1 out of 1 in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na312 b:46.5 occ:1.00	OD1	A:ASN143	2.2	43.2	1.0
	O	A:TYR286	2.3	41.1	1.0
	O	A:HOH480	2.5	66.4	1.0
	OD1	A:ASN291	2.6	34.6	1.0
	O	A:HOH428	2.7	42.8	1.0
	O	A:HOH490	3.0	61.1	1.0
	CG	A:ASN143	3.3	40.9	1.0
	CG	A:ASN291	3.4	35.7	1.0
	C	A:TYR286	3.5	40.8	1.0
	ND2	A:ASN291	3.6	32.8	1.0
	CD2	A:PHE288	3.8	38.5	1.0
	ND2	A:ASN143	3.9	44.0	1.0
	CE2	A:PHE288	4.1	37.1	1.0
	CB	A:TYR286	4.1	48.7	1.0
	N	A:VAL287	4.3	38.5	1.0
	CA	A:VAL287	4.3	36.4	1.0
	CA	A:TYR286	4.4	43.6	1.0
	CB	A:ASN143	4.5	37.6	1.0
	N	A:PHE288	4.5	32.8	1.0
	CB	A:ASN291	4.6	35.6	1.0
	CA	A:ASN143	4.7	35.7	1.0
	O	A:GLY142	4.7	38.7	1.0
	CG	A:PHE288	4.9	35.0	1.0
	C	A:VAL287	5.0	35.4	1.0

Reference:

A.Chaikuad, M.Tuppi, J.Gebel, C.H.Arrowsmith, A.M.Edwards, C.Bountra, V.Dotsch, S.Knapp, Structural Genomics Consortium (Sgc). Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Double Phosphorylated P63 PAD2P Peptide To Be Published.

Page generated: Tue Oct 8 13:20:12 2024

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