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Sodium in PDB 7ya9: FIS1 (Mitochondrial Fission 1 Protein)

Protein crystallography data

The structure of FIS1 (Mitochondrial Fission 1 Protein), PDB code: 7ya9 was solved by N.M.Duc, S.M.Bong, B.I.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.64 / 1.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.066, 56.066, 97.661, 90, 90, 90
R / Rfree (%) 18.8 / 22.2

Sodium Binding Sites:

The binding sites of Sodium atom in the FIS1 (Mitochondrial Fission 1 Protein) (pdb code 7ya9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the FIS1 (Mitochondrial Fission 1 Protein), PDB code: 7ya9:

Sodium binding site 1 out of 1 in 7ya9

Go back to Sodium Binding Sites List in 7ya9
Sodium binding site 1 out of 1 in the FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na705

b:13.8
occ:0.50
O A:HOH804 3.1 30.5 1.0
N A:VAL11 3.4 7.5 1.0
CA A:SER10 3.7 5.6 1.0
CG2 A:VAL11 3.9 21.4 1.0
CB A:SER10 4.0 6.2 1.0
C A:SER10 4.1 5.4 1.0
OE1 A:GLU12 4.1 23.4 1.0
CB A:VAL11 4.3 12.9 1.0
CA A:VAL11 4.5 10.5 1.0
O A:VAL9 4.8 7.2 1.0
N A:SER10 4.8 5.5 1.0

Reference:

N.M.Duc, S.M.Bong, B.I.Lee. Insight Into the Mitochondria-Er Tethering Revealed By the Crystal Structure of FIS1-BAP31 Complex To Be Published.
Page generated: Mon Aug 18 12:40:38 2025

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