Sodium in PDB, part 269 (files: 10721-10760),
PDB 7xtt-7yzx
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10721-10760 (PDB 7xtt-7yzx).
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7xtt (Na: 2) - The Structure of Engineered Tfcut S130A in Complex with Mhet
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7xu8 (Na: 1) - Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution.
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7xxk (Na: 2) - Crystal Structure of Sars-Cov-2 N-Ctd in Complex with Gmp
Other atoms:
K (9);
Cl (13);
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7xyr (Na: 9) - Cystal Structure of Beta-Glucuronidase From Bacteroides Thetaiotaomicron
Other atoms:
Mg (22);
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7y44 (Na: 4) - Re-Refinement of Damage Free X-Ray Structure of Bovine Cytochrome C Oxidase at 1.9 Angstrom Resolution
Other atoms:
Cu (6);
Zn (2);
Fe (4);
Mg (2);
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7y52 (Na: 2) - Crystal Structure of Peptidyl-Trna Hydrolase From Enterococcus Faecium
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7y6i (Na: 4) - Cryo-Em Structure of Human Sodium-Chloride Cotransporter
Other atoms:
Cl (4);
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7y7w (Na: 2) - Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Gaba in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom
Other atoms:
Cl (1);
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7y7y (Na: 2) - Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom
Other atoms:
Cl (1);
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7y8s (Na: 3) - Crystal Structure of Sdscam FNIII1-3 Domains, Isoform BETA2V6
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7y94 (Na: 2) - Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Adenine
Other atoms:
Cl (5);
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7y95 (Na: 8) - Crystal Structure of Sdscam IG1 Domain, Isoform BETA6V2
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7y9h (Na: 3) - Crystal Structure of Diterpene Synthase Vena From Streptomyces Venezuelae Atcc 15439
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7ya4 (Na: 1) - Formate Dehydrogenase From Novosphingobium Sp. AP12 with Nad and Azide
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7ya9 (Na: 1) - FIS1 (Mitochondrial Fission 1 Protein)
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7ybg (Na: 2) - Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant)
Other atoms:
Cl (1);
Zn (1);
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7yf7 (Na: 135) - uc(Nmr) Solution Structures of the Dna Minidumbbell Formed By Two Atttt Repeats
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7ygi (Na: 2) - Crystal Structure of P53 Dbd Domain in Complex with Azurin
Other atoms:
Zn (2);
K (2);
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7ykb (Na: 1) - Neutron Structure of Pcya D105N Mutant Complexed with Biliverdin at Room Temperature
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7ymg (Na: 2) - Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with 2-({3- Ethyl-[1,2,4]Triazolo[4,3-B]Pyridazin-6-Yl}Amino)-3-(1H-Indol-3-Yl) Propan-1-Ol
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7yne (Na: 2) - Crystal Structure of Fragmin Domain-1 (1-160) in Complex with G-Form Actin
Other atoms:
Ca (12);
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7ynh (Na: 2) - Catalytic Intermediate of Copper Amine Oxidase Determined By Serial Femtosecond X-Ray Crystallography Using A Single-Flow Liquid Jet System
Other atoms:
Cu (2);
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7ynu (Na: 1) - Crystal Structure of Hen Egg White Lysozyme Introduced with O-(2- Nitrobenzyl)-L-Tyrosine
Other atoms:
Cl (5);
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7ynv (Na: 1) - Crystal Structure of Photolysed Hen Egg White Lysozyme Introduced with O-(2-Nitrobenzyl)-L-Tyrosine
Other atoms:
Cl (5);
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7ynx (Na: 12) - Crystal Structure of PIRH2 Bound to Poly-Ala Peptide
Other atoms:
Zn (16);
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7ypy (Na: 2) - Bovine Heart Cytochrome C Oxidase in Fully Oxidized State at 1.5 Angstrom Resolution
Other atoms:
Mg (2);
Zn (2);
Cu (6);
Fe (4);
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7ypz (Na: 1) - Zafirlukast in Complex with CRM1-Ran-RANBP1
Other atoms:
Mg (1);
Cl (4);
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7yq0 (Na: 1) - Crystal Structure of Adenosine 5'-Phosphosulfate Kinase From Archaeoglobus Fulgidus in Complex with Adp
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7yqn (Na: 2) - Crystal Structure of Ecoli Malate Synthase G
Other atoms:
Cl (3);
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7yqs (Na: 1) - Neutron Structure of A L-Rhamnose-Alpha-1,4-D-Glucuronate Lyase From Fusarium Oxysporum 12S, L-Rha Complex
Other atoms:
Ca (1);
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7yrk (Na: 3) - Crystal Structure of the Hen Egg Lysozyme-2-Oxidobenzylidene- Threoninato-Copper (II) Complex
Other atoms:
Cl (4);
Cu (1);
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7ytw (Na: 4) - Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter
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7yu0 (Na: 3) - Structure of 6-Aminohexanoate-Oligomer Hydrolase Nylc Precursor, H130Y/N266A/T267A Mutant
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7yu1 (Na: 3) - Structure of 6-Aminohexanoate-Oligomer Hydrolase Nylc Precursor, D122G/H130Y/T267C Mutant
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7yx0 (Na: 1) - Crystal Structure of the Full-Length Short Lov Protein SBW25-Lov From Pseudomonas Fluorescens (Light State)
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7yxd (Na: 1) - Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment
Other atoms:
F (4);
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7yxe (Na: 1) - Crystal Structure of YTHDF2 with Compound ZA_143
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7yyg (Na: 1) - Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn
Other atoms:
Ca (1);
Cl (1);
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7yzn (Na: 1) - Structure of C-Terminally Truncated AIF5B From Pyrococcus Abyssi Complexed with Gtp
Other atoms:
Mg (1);
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7yzx (Na: 1) - Scpa From Streptococcus Pyogenes, D783A Mutant.
Other atoms:
Ca (1);
Page generated: Sat Aug 23 06:31:35 2025
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