Sodium in PDB 7ul2: Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6

The structure of Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6 (pdb code 7ul2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6, PDB code: 7ul2:

Sodium binding site 1 out of 1 in the Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryoem Structure of Inactive NTSR1 Bound to SR48692 and NB6 within 5.0Å range: probe atom residue distance (Å) B Occ R:Na502 b:10.5 occ:1.00 OD1 R:ASP112 2.4 8.1 1.0 OG1 R:THR155 2.9 7.7 1.0 O R:HOH610 3.1 7.6 1.0 CG R:ASP112 3.2 8.1 1.0 OG R:SER111 3.3 8.1 1.0 CB R:SER111 3.3 8.1 1.0 O R:LEU108 3.5 7.7 1.0 N R:ASP112 3.5 8.1 1.0 OD2 R:ASP112 3.8 8.1 1.0 C R:SER111 3.9 8.1 1.0 CG2 R:THR155 3.9 7.7 1.0 CB R:THR155 3.9 7.7 1.0 CA R:ASP112 4.0 8.1 1.0 CA R:SER111 4.2 8.1 1.0 CB R:ASP112 4.2 8.1 1.0 CD2 R:LEU108 4.3 7.7 1.0 C R:LEU108 4.4 7.7 1.0 O R:SER111 4.5 8.1 1.0 CA R:THR155 4.5 7.7 1.0 CA R:LEU108 4.7 7.7 1.0 N R:SER111 4.8 8.1 1.0 CB R:LEU108 5.0 7.7 1.0

M.J.Robertson, M.M.Papasergi-Scott, F.He, A.B.Seven, J.G.Meyerowitz, O.Panova, M.C.Peroto, T.Che, G.Skiniotis. Structure Determination of Inactive-State Gpcrs with A Universal Nanobody. Nat.Struct.Mol.Biol. V. 29 1188 2022.
ISSN: ESSN 1545-9985
PubMed: 36396979
DOI: 10.1038/S41594-022-00859-8