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Sodium in PDB 7pwn: Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

Enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

All present enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn was solved by T.Prange, N.Colloc'h, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.63 / 1.64
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.429, 95.177, 104.398, 90, 90, 90
R / Rfree (%) 17.6 / 20.9

Other elements in 7pwn:

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon also contains other interesting chemical elements:

Argon (Ar) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon (pdb code 7pwn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7pwn

Go back to Sodium Binding Sites List in 7pwn
Sodium binding site 1 out of 2 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1101

b:24.3
occ:1.00
O A:ILE88 2.1 22.8 1.0
O A:ILE94 2.2 21.5 1.0
O A:HOH1411 2.4 31.8 1.0
O A:TYR91 2.6 20.5 1.0
OE1 A:GLU136 2.7 32.1 1.0
C A:ILE88 3.2 21.6 1.0
O A:ASN92 3.2 35.3 1.0
C A:ILE94 3.4 18.8 1.0
CD A:GLU136 3.5 43.3 1.0
CA A:ILE88 3.6 21.4 1.0
C A:ASN92 3.6 28.0 1.0
C A:TYR91 3.6 24.6 1.0
OE2 A:GLU136 3.8 49.5 1.0
CA A:ASN92 3.8 30.7 1.0
N A:ILE94 4.0 20.5 1.0
CB A:ILE88 4.1 19.8 1.0
N A:ASN92 4.2 26.6 1.0
CA A:ILE94 4.2 18.7 1.0
O A:HOH1448 4.2 36.4 1.0
ND1 A:HIS95 4.3 34.8 1.0
N A:HIS95 4.3 18.3 1.0
N A:GLU89 4.4 23.0 1.0
N A:HIS93 4.4 25.3 1.0
CA A:HIS95 4.6 20.5 1.0
CB A:ILE94 4.7 18.2 1.0
O A:PHE87 4.7 20.5 1.0
CG A:GLU136 4.7 39.2 1.0
CA A:TYR91 4.8 22.2 1.0
C A:HIS93 4.8 21.4 1.0
N A:TYR91 4.9 21.5 1.0
CE1 A:HIS95 4.9 30.2 1.0
CG2 A:ILE88 4.9 23.4 1.0
N A:ILE88 4.9 19.8 1.0
CA A:GLU89 5.0 24.2 1.0

Sodium binding site 2 out of 2 in 7pwn

Go back to Sodium Binding Sites List in 7pwn
Sodium binding site 2 out of 2 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1101

b:18.9
occ:1.00
O B:ILE94 2.2 16.1 1.0
O B:ILE88 2.2 19.4 1.0
O B:HOH1420 2.4 25.1 1.0
O B:TYR91 2.6 16.1 1.0
OE1 B:GLU136 2.7 30.2 1.0
O B:ASN92 3.0 27.1 1.0
C B:ILE88 3.3 17.7 1.0
C B:ILE94 3.4 15.9 1.0
CD B:GLU136 3.5 35.7 1.0
C B:ASN92 3.5 23.9 1.0
C B:TYR91 3.6 20.3 1.0
CA B:ILE88 3.7 16.4 1.0
CA B:ASN92 3.8 24.6 1.0
OE2 B:GLU136 3.8 39.4 1.0
N B:ILE94 4.0 16.2 1.0
ND1 B:HIS95 4.1 28.7 1.0
N B:ASN92 4.1 21.9 1.0
CB B:ILE88 4.2 17.6 1.0
CA B:ILE94 4.2 15.2 1.0
O B:HOH1445 4.3 30.6 1.0
N B:HIS93 4.4 21.0 1.0
N B:HIS95 4.4 16.4 1.0
N B:GLU89 4.5 17.7 1.0
CE1 B:HIS95 4.6 27.5 1.0
CA B:HIS95 4.6 16.0 1.0
CG B:GLU136 4.7 30.7 1.0
CB B:ILE94 4.7 15.0 1.0
O B:PHE87 4.7 15.4 1.0
CA B:TYR91 4.8 18.4 1.0
C B:HIS93 4.8 17.0 1.0
N B:TYR91 4.9 18.0 1.0
CG2 B:ILE88 4.9 18.2 1.0
N B:ILE88 5.0 15.4 1.0
CA B:GLU89 5.0 18.7 1.0

Reference:

T.Prange, P.Carpentier, A.C.Dhaussy, E.Girard, N.Colloc'h. Comparative Study of the Effects of High Hydrostatic Pressure Per Se and High Argon Pressure on Urate Oxidase Ligand Stabilization Acta Cryst. D V. 78 162 2022.
DOI: 10.1107/S2059798321012134
Page generated: Mon Aug 18 11:24:53 2025

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