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Sodium in PDB 7pvs: Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200

Enzymatic activity of Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200

All present enzymatic activity of Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200, PDB code: 7pvs was solved by A.Camara-Artigas, M.C.Salinas Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.75 / 1.05
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 27.125, 43.479, 94.58, 90, 90, 90
R / Rfree (%) 16.9 / 18.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200 (pdb code 7pvs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200, PDB code: 7pvs:

Sodium binding site 1 out of 1 in 7pvs

Go back to Sodium Binding Sites List in 7pvs
Sodium binding site 1 out of 1 in the Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Abl SH3 Domain V73E-A74S-S75R-G76T-D77E-G92N- Y93N-N94T-H95E Mutant in Presence of Peg 200 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:30.0
occ:1.00
 OD1 A:ASN114 2.4 24.1 1.0
O A:HOH369 2.5 21.2 1.0
O A:GLU98 2.7 8.5 1.0
H A:SER113 3.0 10.6 0.6
N A:ASN114 3.0 10.5 1.0
HB3 A:ASN114 3.0 19.7 1.0
H A:SER113 3.0 9.9 0.4
CG A:ASN114 3.1 21.9 1.0
HA A:GLU98 3.2 10.1 1.0
HB3 A:PRO112 3.3 12.1 1.0
OG A:SER113 3.3 11.5 0.4
O A:HOH341 3.3 27.5 1.0
N A:SER113 3.3 8.9 0.6
N A:SER113 3.4 8.3 0.4
CB A:ASN114 3.5 16.4 1.0
HB3 A:GLU98 3.5 10.8 1.0
HB2 A:SER113 3.6 13.2 0.6
C A:GLU98 3.6 8.2 1.0
HA A:PRO112 3.8 10.3 1.0
CA A:GLU98 3.8 8.4 1.0
HG A:SER113 3.8 13.8 0.4
HB2 A:PRO112 3.8 12.1 1.0
CA A:ASN114 3.8 12.6 1.0
CB A:PRO112 3.8 10.1 1.0
C A:PRO112 3.9 7.6 1.0
H142 B:P6G202 3.9 24.8 1.0
C A:SER113 3.9 10.8 0.6
C A:SER113 3.9 10.1 0.4
CA A:SER113 4.0 9.6 0.6
CA A:SER113 4.0 9.4 0.4
CA A:PRO112 4.0 8.6 1.0
CB A:GLU98 4.1 9.0 1.0
HG2 A:GLU98 4.1 12.1 1.0
CB A:SER113 4.2 11.1 0.4
CB A:SER113 4.2 11.0 0.6
ND2 A:ASN114 4.3 27.0 1.0
HB2 A:ASN114 4.4 19.7 1.0
HA A:ASN114 4.4 15.1 1.0
O13 B:P6G202 4.5 21.8 1.0
HB3 A:SER113 4.5 13.3 0.4
HD22 A:ASN114 4.5 32.4 1.0
CG A:GLU98 4.6 10.0 1.0
O B:HOH356 4.6 20.9 1.0
C14 B:P6G202 4.7 20.6 1.0
H A:TYR115 4.7 13.3 0.6
O A:PRO112 4.7 8.5 1.0
OG A:SER113 4.9 11.1 0.6
HD21 A:ASN114 4.9 32.4 1.0
N A:TRP99 4.9 8.4 1.0
HB2 A:GLU98 4.9 10.8 1.0
HA A:SER113 4.9 11.5 0.6
HA A:SER113 4.9 11.2 0.4
C A:ASN114 4.9 11.8 1.0
HD1 A:TYR115 4.9 19.0 0.6
HB2 A:SER113 5.0 13.3 0.4
HA A:TRP99 5.0 10.2 1.0

Reference:

A.Camara-Artigas, M.C.Salinas Garcia. The Effect of the Hinge Loops Composition in the Domain Swapping of the SH3 Domain To Be Published.
Page generated: Mon Aug 18 11:24:36 2025

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