Sodium in PDB 6xpm: Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature

The structure of Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature, PDB code: 6xpm was solved by Y.Kim, J.Johnson, L.Welk, M.Endres, A.Levens, D.Sherrell, G.Babnigg, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.59 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.627, 102.627, 102.834, 90.00, 90.00, 120.00
R / Rfree (%)	14.9 / 18.4

The binding sites of Sodium atom in the Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature (pdb code 6xpm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature, PDB code: 6xpm:

Sodium binding site 1 out of 1 in the Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:56.5 occ:1.00 O A:THR197 2.5 51.9 1.0 OH A:TYR146 2.5 61.4 1.0 O A:PRO194 2.6 58.6 1.0 CZ A:TYR146 3.6 58.3 1.0 C A:THR197 3.6 49.2 1.0 C A:PRO194 3.7 58.4 1.0 CE2 A:TYR146 4.1 58.4 1.0 CA A:ASN198 4.3 48.2 1.0 CD1 A:LEU204 4.3 38.8 1.0 N A:ASN198 4.4 50.3 1.0 N A:THR197 4.5 49.1 1.0 CA A:VAL195 4.5 59.6 1.0 N A:VAL195 4.6 55.0 1.0 CE1 A:TYR146 4.6 53.8 1.0 C A:VAL195 4.6 59.4 1.0 CA A:PRO194 4.6 52.8 1.0 CB A:PRO194 4.7 56.5 1.0 CA A:THR197 4.7 43.0 1.0 O A:VAL195 4.7 61.4 1.0 CB A:ASN198 4.8 40.6 1.0

Y.Kim, J.Johnson, L.Welk, M.Endres, A.Levens, D.Sherrell, G.Babnigg, A.Joachimiak. Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature To Be Published.