Sodium in PDB 6vb5: Hla-B*15:02 Complexed with A Synthetic Peptide

The structure of Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb5 was solved by R.J.Schutte, D.Li, D.A.Ostrov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.75 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.825, 81.277, 109.430, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 22.4

The binding sites of Sodium atom in the Hla-B*15:02 Complexed with A Synthetic Peptide (pdb code 6vb5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb5:

Sodium binding site 1 out of 1 in the Hla-B*15:02 Complexed with A Synthetic Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hla-B*15:02 Complexed with A Synthetic Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:48.1 occ:1.00 O B:HOH262 2.4 41.2 1.0 O B:LEU87 2.4 41.8 1.0 O B:HIS84 2.7 40.9 1.0 OD1 B:ASN83 2.8 41.2 1.0 O B:HOH257 3.0 57.3 1.0 O B:HOH250 3.2 43.0 1.0 C B:LEU87 3.6 44.6 1.0 C B:HIS84 3.6 41.7 1.0 CG B:ASN83 3.8 47.6 1.0 N B:HIS84 4.1 33.4 1.0 N B:LEU87 4.2 40.6 1.0 CA B:LEU87 4.2 45.3 1.0 CB B:LEU87 4.2 36.7 1.0 O B:HOH264 4.3 48.4 1.0 ND2 B:ASN83 4.3 48.4 1.0 CA B:VAL85 4.3 39.1 1.0 N B:VAL85 4.4 36.4 1.0 O B:VAL85 4.4 44.9 1.0 C B:VAL85 4.5 43.3 1.0 O B:SER88 4.5 49.7 1.0 C B:SER88 4.6 51.7 1.0 CA B:HIS84 4.6 37.3 1.0 N B:SER88 4.7 52.8 1.0 CA B:SER88 4.9 49.7 1.0 N B:GLN89 4.9 52.2 1.0

R.J.Schutte, D.Li, D.A.Ostrov. Hla-B*15:02 Complexed with A Synthetic Peptide To Be Published.