Atomistry » Sodium » PDB 6v1a-6vf6 » 6v61
Atomistry »
  Sodium »
    PDB 6v1a-6vf6 »
      6v61 »

Sodium in PDB 6v61: Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril

Enzymatic activity of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril

All present enzymatic activity of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril, PDB code: 6v61 was solved by N.Maltseva, Y.Kim, S.Clancy, M.Endres, R.Mulligan, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 1.58
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 77.893, 77.893, 241.426, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 19.5

Other elements in 6v61:

The structure of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril (pdb code 6v61). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril, PDB code: 6v61:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 6v61

Go back to Sodium Binding Sites List in 6v61
Sodium binding site 1 out of 2 in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na305

b:29.0
occ:1.00
 O A:GLY123 2.3 22.2 1.0
O A:HOH458 2.4 24.9 1.0
O A:HOH527 2.4 40.1 1.0
O A:HOH427 2.5 28.8 1.0
OD1 A:ASP91 2.5 24.5 1.0
O A:HOH502 2.5 26.6 1.0
CG A:ASP91 3.1 27.9 1.0
OD2 A:ASP91 3.4 30.8 1.0
C A:GLY123 3.5 19.8 1.0
OD2 A:ASP126 4.0 35.0 1.0
CA A:GLY124 4.0 19.2 1.0
N A:ASP91 4.1 22.9 1.0
O A:HOH494 4.1 35.7 1.0
N A:GLY124 4.2 18.9 1.0
CB A:ASP91 4.3 22.4 1.0
O A:HOH525 4.3 54.6 1.0
O A:HOH558 4.4 53.0 1.0
O A:HOH456 4.4 22.9 1.0
C A:GLY124 4.5 21.7 1.0
CB A:ASP126 4.5 22.9 1.0
N A:MET125 4.5 20.0 1.0
CA A:ASP91 4.5 24.0 1.0
N A:ASP126 4.6 21.1 1.0
CA A:GLY123 4.6 19.0 1.0
CG A:ASP126 4.7 44.6 1.0
C A:ASN90 4.8 22.3 1.0
CA A:ASN90 4.8 22.7 1.0

Sodium binding site 2 out of 2 in 6v61

Go back to Sodium Binding Sites List in 6v61
Sodium binding site 2 out of 2 in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:42.3
occ:1.00
 O A:GLY190 2.3 34.5 1.0
O A:HOH468 2.4 53.8 1.0
OD1 A:ASN193 2.4 32.5 1.0
O A:HOH526 2.5 55.5 1.0
O A:HOH533 2.6 55.8 1.0
CG A:ASN193 3.2 31.9 1.0
ND2 A:ASN193 3.4 37.4 1.0
C A:GLY190 3.4 30.9 1.0
CA A:GLY190 3.9 28.4 1.0
O A:HOH449 4.3 27.4 1.0
N A:VAL191 4.6 28.6 1.0
OD2 A:ASP233 4.6 47.2 1.0
CB A:ASN193 4.7 29.3 1.0
O A:VAL191 4.8 35.3 1.0
CB A:ASP233 4.9 32.7 1.0
CA A:VAL191 4.9 29.5 1.0

Reference:

N.Maltseva, Y.Kim, S.Clancy, M.Endres, R.Mulligan, A.Joachimiak. Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril. To Be Published.
Page generated: Tue Oct 8 14:17:10 2024

Last articles

Na in 1KCC
Na in 1KC6
Na in 1KA0
Na in 1K8Y
Na in 1K8Z
Na in 1K8X
Na in 1K7X
Na in 1K7E
Na in 1K8P
Na in 1K73
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy