Sodium in PDB 6rj4: Molybdenum Storage Protein - P6422, Adp

The structure of Molybdenum Storage Protein - P6422, Adp, PDB code: 6rj4 was solved by U.Ermler, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.17 / 1.90
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	188.680, 188.680, 188.630, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 20

The structure of Molybdenum Storage Protein - P6422, Adp also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Sodium atom in the Molybdenum Storage Protein - P6422, Adp (pdb code 6rj4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Molybdenum Storage Protein - P6422, Adp, PDB code: 6rj4:

Sodium binding site 1 out of 1 in the Molybdenum Storage Protein - P6422, Adp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Molybdenum Storage Protein - P6422, Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Na305 b:35.2 occ:1.00 O B:ILE123 2.6 32.2 1.0 O B:HOH533 2.6 42.1 1.0 O B:GLY115 2.7 30.1 1.0 C B:GLY115 3.3 32.6 1.0 CB B:ALA119 3.6 24.7 1.0 CA B:ALA119 3.7 26.8 1.0 CA B:GLY115 3.7 31.8 1.0 CG D:PRO135 3.7 34.4 1.0 CA B:PRO124 3.7 27.9 1.0 C B:ILE123 3.7 33.2 1.0 N B:VAL125 3.8 24.4 1.0 O D:HOH464 3.9 32.4 1.0 C B:PRO124 3.9 30.3 1.0 N B:ALA119 3.9 25.1 1.0 CG2 B:VAL125 4.1 26.5 1.0 CB D:PRO135 4.2 32.4 1.0 N B:PRO124 4.2 29.8 1.0 N B:GLN116 4.3 28.3 1.0 C B:LEU118 4.5 27.5 1.0 O B:HOH540 4.5 44.5 1.0 O B:PRO124 4.7 30.1 1.0 CA B:GLN116 4.7 27.2 1.0 CB B:VAL125 4.9 28.6 1.0 CA B:VAL125 4.9 28.6 1.0 CD D:PRO135 4.9 31.4 1.0 CA B:ILE123 5.0 31.9 1.0

S.Brunle, M.L.Eisinger, J.Poppe, D.J.Mills, J.D.Langer, J.Vonck, U.Ermler. Molybdate Pumping Into the Molybdenum Storage Protein Via An Atp-Powered Piercing Mechanism. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31811022
DOI: 10.1073/PNAS.1913031116