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Sodium in PDB 6rca: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A:
2.4.2.3;
2.4.2.3;
Protein crystallography data
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca
was solved by
I.I.Prokofev,
P.A.Eistrikh-Geller,
V.V.Balaev,
A.G.Gabdoulkhakov,
C.Betzel,
A.A.Lashkov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 44.60 / 1.35 |
| Space group | P 31 |
| Cell size a, b, c (Å), α, β, γ (°) | 93.245, 93.245, 152.928, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 13.5 / 16.9 |
Other elements in 6rca:
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
| Chlorine | (Cl) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
(pdb code 6rca). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A, PDB code: 6rca:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 6rca
Go back to
Sodium Binding Sites List in 6rca
Sodium binding site 1 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A within 5.0Å range:
|
Sodium binding site 2 out of 3 in 6rca
Go back to
Sodium Binding Sites List in 6rca
Sodium binding site 2 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A within 5.0Å range:
|
Sodium binding site 3 out of 3 in 6rca
Go back to
Sodium Binding Sites List in 6rca
Sodium binding site 3 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A within 5.0Å range:
|
Reference:
I.I.Prokofev,
P.A.Eistrikh-Geller,
V.V.Balaev,
A.G.Gabdoulkhakov,
C.Betzel,
A.A.Lashkov.
X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 2.2'-Anhydrouridine at 1.34 A. To Be Published.
Page generated: Mon Aug 18 06:55:00 2025
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