Sodium in PDB 6qsk: Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate.

The structure of Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate., PDB code: 6qsk was solved by S.Newstead, J.L.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.43 / 3.39
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	45.705, 102.716, 181.253, 89.93, 90.08, 90.19
R / Rfree (%)	25.3 / 32

The binding sites of Sodium atom in the Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate. (pdb code 6qsk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate., PDB code: 6qsk:

Sodium binding site 1 out of 1 in the Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na402 b:77.2 occ:1.00 OH D:TYR28 2.4 77.3 1.0 H5'1 D:5GP401 3.0 0.7 1.0 O D:TYR281 3.1 63.2 1.0 CA D:GLY285 3.1 81.5 1.0 CZ D:TYR281 3.3 72.1 1.0 CZ D:TYR28 3.3 76.1 1.0 CE2 D:TYR281 3.4 70.2 1.0 H5'2 D:5GP401 3.6 0.7 1.0 CE2 D:TYR28 3.7 72.1 1.0 CE1 D:TYR281 3.7 67.8 1.0 OH D:TYR281 3.7 88.8 1.0 C5' D:5GP401 3.7 0.4 1.0 N D:GLY285 3.8 73.5 1.0 CD2 D:TYR281 3.8 67.6 1.0 C D:TYR281 3.9 68.0 1.0 CD1 D:TYR281 4.1 67.1 1.0 O5' D:5GP401 4.1 0.7 1.0 CG D:TYR281 4.2 65.7 1.0 C D:GLY285 4.2 73.2 1.0 CA D:SER282 4.3 62.6 1.0 O2P D:5GP401 4.4 0.9 1.0 O3P D:5GP401 4.5 0.1 1.0 CE1 D:TYR28 4.5 78.0 1.0 N D:SER282 4.5 66.4 1.0 O D:SER282 4.6 69.2 1.0 P D:5GP401 4.7 0.6 1.0 C D:SER282 4.7 65.0 1.0 O D:GLY285 4.9 75.2 1.0 N D:ALA286 4.9 65.0 1.0 CA D:TYR281 5.0 65.2 1.0 CD2 D:TYR28 5.0 70.5 1.0

S.Newstead, J.L.Parker. Crystal Structure of A Nucleotide Sugar Transporter with Bound Nucleotide Monophosphate. To Be Published.