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Sodium in PDB 6hdp: Human DYRK2 Bound to Scorzodihydrostilbene A

Enzymatic activity of Human DYRK2 Bound to Scorzodihydrostilbene A

All present enzymatic activity of Human DYRK2 Bound to Scorzodihydrostilbene A:
2.7.12.1;

Protein crystallography data

The structure of Human DYRK2 Bound to Scorzodihydrostilbene A, PDB code: 6hdp was solved by J.M.Elkins, M.Soundararajan, P.Proksch, L.Meijer, M.Vollmar, T.Krojer, C.Bountra, A.M.Edwards, C.Arrowsmith, S.Knapp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.82 / 2.30
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.527, 84.527, 148.372, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Human DYRK2 Bound to Scorzodihydrostilbene A (pdb code 6hdp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human DYRK2 Bound to Scorzodihydrostilbene A, PDB code: 6hdp:

Sodium binding site 1 out of 1 in 6hdp

Go back to Sodium Binding Sites List in 6hdp
Sodium binding site 1 out of 1 in the Human DYRK2 Bound to Scorzodihydrostilbene A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human DYRK2 Bound to Scorzodihydrostilbene A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:0.8
occ:0.50
O A:HOH694 2.3 99.1 1.0
O A:HOH613 3.2 58.1 1.0
OH A:PTR309 4.6 63.5 1.0
O1P A:PTR309 4.7 58.1 1.0
CE2 A:PTR309 5.0 63.6 1.0

Reference:

J.M.Elkins, S.Knapp. DYRK2 Bound to Scorzodihydrostilbene A To Be Published.
Page generated: Mon Aug 18 05:15:14 2025

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