Atomistry » Sodium » PDB 5lq7-5m1e » 5lsh
Atomistry »
  Sodium »
    PDB 5lq7-5m1e »
      5lsh »

Sodium in PDB 5lsh: Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae

Enzymatic activity of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae

All present enzymatic activity of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae:
3.2.1.17;

Protein crystallography data

The structure of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae, PDB code: 5lsh was solved by R.Zhang, N.E.Nifantiev, V.Krylov, T.Luetteke, A.J.Scheidig, H.-C.Siebert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.27 / 1.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.108, 56.040, 60.531, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.3

Other elements in 5lsh:

The structure of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae (pdb code 5lsh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae, PDB code: 5lsh:

Sodium binding site 1 out of 1 in 5lsh

Go back to Sodium Binding Sites List in 5lsh
Sodium binding site 1 out of 1 in the Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Lysozyme in Complex with A Tetrasaccharide Fragment of the O- Chain of Lps From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:17.3
occ:1.00
O A:GLY127 2.7 12.5 1.0
C A:GLY127 3.5 9.6 1.0
CA A:GLY127 3.5 12.2 1.0
N A:CYS128 4.8 11.1 1.0
O A:HOH434 4.9 10.0 1.0
N A:GLY127 5.0 13.1 1.0

Reference:

R.Zhang, L.Wu, T.Eckert, M.Burg-Roderfeld, M.A.Rojas-Macias, T.Lutteke, V.B.Krylov, D.A.Argunov, A.Datta, P.Markart, A.Guenther, B.Norden, R.Schauer, A.Bhunia, M.A.Enani, M.Billeter, A.J.Scheidig, N.E.Nifantiev, H.C.Siebert. Lysozyme'S Lectin-Like Characteristics Facilitates Its Immune Defense Function. Q. Rev. Biophys. V. 50 E9 2017.
ISSN: ESSN 1469-8994
PubMed: 29233221
DOI: 10.1017/S0033583517000075
Page generated: Mon Oct 7 22:23:50 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy