Sodium in PDB 5cwl: Crystal Structure of De Novo Designed Helical Repeat Protein DHR54

The structure of Crystal Structure of De Novo Designed Helical Repeat Protein DHR54, PDB code: 5cwl was solved by G.Bhabha, D.C.Ekiert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.93 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.250, 69.100, 82.630, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 20.9

The binding sites of Sodium atom in the Crystal Structure of De Novo Designed Helical Repeat Protein DHR54 (pdb code 5cwl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of De Novo Designed Helical Repeat Protein DHR54, PDB code: 5cwl:

Sodium binding site 1 out of 1 in the Crystal Structure of De Novo Designed Helical Repeat Protein DHR54


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of De Novo Designed Helical Repeat Protein DHR54 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:37.6 occ:1.00 O3 A:PGE201 2.5 32.7 1.0 O4 A:PGE201 2.6 49.1 1.0 O2 A:PGE201 2.6 37.2 1.0 O1 A:PGE201 2.9 50.9 1.0 C4 A:PGE201 3.3 31.5 1.0 C3 A:PGE201 3.4 32.9 1.0 C5 A:PGE201 3.4 34.3 1.0 C2 A:PGE201 3.4 42.0 1.0 C6 A:PGE201 3.5 38.9 1.0 H4 A:PGE201 3.5 37.8 1.0 HO1 A:PGE201 3.6 61.1 1.0 H22 A:PGE201 3.6 50.4 1.0 H32 A:PGE201 3.6 39.5 1.0 C1 A:PGE201 3.6 42.7 1.0 H52 A:PGE201 3.7 41.1 1.0 O A:HOH315 3.7 66.1 1.0 O A:HOH358 3.8 34.6 1.0 H1 A:PGE201 3.9 51.3 1.0 H6 A:PGE201 4.0 46.7 1.0 O A:SER129 4.2 38.5 0.3 O A:SER129 4.2 38.2 0.3 O A:SER129 4.3 37.7 0.4 H42 A:PGE201 4.4 37.8 1.0 H3 A:PGE201 4.4 39.5 1.0 H62 A:PGE201 4.4 46.7 1.0 H5 A:PGE201 4.4 41.1 1.0 H2 A:PGE201 4.5 50.4 1.0 H12 A:PGE201 4.6 51.3 1.0 HA A:SER129 4.7 40.1 0.3 HA A:SER129 4.8 40.0 0.4 HA A:SER129 4.8 39.4 0.3

T.J.Brunette, F.Parmeggiani, P.S.Huang, G.Bhabha, D.C.Ekiert, S.E.Tsutakawa, G.L.Hura, J.A.Tainer, D.Baker. Exploring the Repeat Protein Universe Through Computational Protein Design. Nature V. 528 580 2015.
ISSN: ESSN 1476-4687
PubMed: 26675729
DOI: 10.1038/NATURE16162