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Sodium in PDB 5clw: Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose

Enzymatic activity of Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose

All present enzymatic activity of Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose:
2.4.1.18;

Protein crystallography data

The structure of Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose, PDB code: 5clw was solved by T.Krojer, D.S.Froese, S.Goubin, C.Strain-Damerell, P.Mahajan, N.Burgess-Brown, F.Von Delft, C.Bountra, C.H.Arrowsmith, A.Edwards, W.Yue, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 156.60 / 2.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 116.689, 164.536, 313.208, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose (pdb code 5clw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose, PDB code: 5clw:

Sodium binding site 1 out of 1 in 5clw

Go back to Sodium Binding Sites List in 5clw
Sodium binding site 1 out of 1 in the Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1008

b:19.0
occ:1.00
 NE B:ARG576 3.1 44.4 1.0
NH2 B:ARG576 3.3 40.0 1.0
CZ B:ARG576 3.6 55.6 1.0
CE2 B:PHE579 3.9 35.7 1.0
CG1 B:VAL505 3.9 32.7 1.0
CZ B:PHE579 4.1 33.7 1.0
CB B:VAL505 4.1 32.4 1.0
CD B:ARG576 4.2 27.7 1.0
CD1 B:PHE509 4.3 34.8 1.0
CA B:VAL505 4.4 30.9 1.0
CG B:ARG576 4.4 28.6 1.0
CE1 B:PHE509 4.7 34.5 1.0
O B:VAL505 4.7 40.2 1.0
NH1 B:ARG576 5.0 43.2 1.0

Reference:

T.Krojer, D.S.Froese, S.Goubin, C.Strain-Damerell, P.Mahajan, N.Burgess-Brown, F.Von Delft, C.Bountra, C.H.Arrowsmith, A.Edwards, W.Yue, Structural Genomics Consortium (Sgc). Crystal Structure of Human Glycogen Branching Enzyme (GBE1) in Complex with Maltoheptaose To Be Published.
Page generated: Mon Oct 7 20:22:48 2024

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