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Sodium in PDB 4rcx: Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein

Enzymatic activity of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein

All present enzymatic activity of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein:
5.3.1.1;

Protein crystallography data

The structure of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein, PDB code: 4rcx was solved by S.Lara-Gonzalez, P.Jimenez-Sandoval, P.Estrella-Hernandez, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 1.75
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.970, 56.730, 105.860, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 20.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein (pdb code 4rcx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein, PDB code: 4rcx:

Sodium binding site 1 out of 1 in 4rcx

Go back to Sodium Binding Sites List in 4rcx
Sodium binding site 1 out of 1 in the Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:17.1
occ:1.00
 O A:VAL221 2.3 17.9 1.0
O A:ALA216 2.4 19.0 1.0
O A:CYS218 2.4 18.5 1.0
OG A:SER245 2.4 20.4 1.0
O A:HOH483 2.4 32.8 1.0
CB A:SER245 3.4 17.9 1.0
C A:VAL221 3.4 15.6 1.0
C A:CYS218 3.5 17.9 1.0
C A:ALA216 3.5 18.9 1.0
N A:CYS218 4.0 17.8 1.0
N A:VAL221 4.0 16.5 1.0
C A:ALA217 4.1 24.5 1.0
CA A:SER245 4.1 18.9 1.0
CA A:VAL221 4.2 15.9 1.0
O A:PRO219 4.3 18.2 1.0
C A:PRO219 4.3 18.4 1.0
CA A:PRO219 4.3 18.8 1.0
CB A:VAL221 4.3 16.6 1.0
N A:PRO219 4.4 18.7 1.0
CA A:CYS218 4.4 20.0 1.0
CA A:ALA216 4.4 16.0 1.0
O A:ALA217 4.4 20.8 1.0
N A:ALA217 4.4 17.3 1.0
CA A:ALA217 4.5 19.2 1.0
N A:ASP222 4.5 15.2 1.0
O A:HOH479 4.5 35.4 1.0
CE1 A:PHE4 4.5 16.1 1.0
O A:LEU215 4.7 17.1 1.0
CA A:ASP222 4.7 15.1 1.0
N A:LYS246 4.7 32.7 1.0
C A:SER245 4.8 25.5 1.0
N A:ASP220 4.9 18.1 1.0
CB A:CYS218 5.0 21.0 1.0

Reference:

S.Lara-Gonzalez, P.Jimenez-Sandoval, P.Estrella-Hernandez, L.G.Brieba. Trichomonas Vaginalis Triosephosphate Isomerase Loop 3 Deletion Protein To Be Published.
Page generated: Sun Aug 17 21:37:11 2025

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