Sodium in PDB 4r6k: Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation

The structure of Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation, PDB code: 4r6k was solved by Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, J.D.Attonito, A.Scott Glenn, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.94
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.932, 75.727, 119.738, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 26

The binding sites of Sodium atom in the Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation (pdb code 4r6k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation, PDB code: 4r6k:

Sodium binding site 1 out of 1 in the Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:31.4 occ:1.00 O A:HOH625 2.3 28.6 1.0 O A:HOH684 2.3 29.0 1.0 O A:LYS335 2.3 40.5 1.0 O A:LEU338 2.4 28.6 1.0 O A:HOH712 2.5 33.9 1.0 OG1 A:THR343 2.7 36.7 1.0 C A:LYS335 3.4 26.8 1.0 C A:LEU338 3.6 30.8 1.0 CB A:THR343 3.8 40.9 1.0 CG2 A:THR343 3.9 35.1 1.0 N A:LEU338 4.0 30.1 1.0 CA A:PRO336 4.1 37.2 1.0 O A:PRO336 4.1 33.2 1.0 C A:PRO336 4.1 36.2 1.0 CA A:LEU338 4.2 28.7 1.0 N A:PRO336 4.2 31.2 1.0 CB A:LEU338 4.3 33.6 1.0 CA A:LYS335 4.3 35.9 1.0 O A:ASN339 4.3 24.9 1.0 O A:HOH717 4.5 35.4 1.0 CB A:LYS335 4.6 38.2 1.0 C A:ASN339 4.6 25.6 1.0 N A:ASN339 4.7 25.9 1.0 N A:LYS337 4.9 31.3 1.0 CA A:ASN339 4.9 36.0 1.0 C A:LYS337 5.0 42.0 1.0

Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, A.Scott Glenn, J.D.Attonito, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of Transporter Yeso From Bacillus Subtilis, Target Efi-510761 To Be Published.