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Sodium in PDB 4lz4: X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
Enzymatic activity of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
All present enzymatic activity of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase:
3.4.21.5;
3.4.21.5;
Protein crystallography data
The structure of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase, PDB code: 4lz4
was solved by
A.Pica,
I.Russo Krauss,
A.Merlino,
F.Sica,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.62 / 2.56 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 61.736, 120.725, 67.233, 90.00, 94.22, 90.00 |
| R / Rfree (%) | 16.8 / 22.7 |
Other elements in 4lz4:
The structure of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase also contains other interesting chemical elements:
| Potassium | (K) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
(pdb code 4lz4). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase, PDB code: 4lz4:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase, PDB code: 4lz4:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 4lz4
Go back to
Sodium Binding Sites List in 4lz4
Sodium binding site 1 out
of 2 in the X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase within 5.0Å range:
|
Sodium binding site 2 out of 2 in 4lz4
Go back to
Sodium Binding Sites List in 4lz4
Sodium binding site 2 out
of 2 in the X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase within 5.0Å range:
|
Reference:
A.Pica,
I.Russo Krauss,
A.Merlino,
S.Nagatoishi,
N.Sugimoto,
F.Sica.
Dissecting the Contribution of Thrombin Exosite I in the Recognition of Thrombin Binding Aptamer. Febs J. V. 280 6581 2013.
ISSN: ISSN 1742-464X
PubMed: 24128303
DOI: 10.1111/FEBS.12561
Page generated: Sun Aug 17 20:32:12 2025
ISSN: ISSN 1742-464X
PubMed: 24128303
DOI: 10.1111/FEBS.12561
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