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Sodium in PDB 4h0d: New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae

Enzymatic activity of New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae

All present enzymatic activity of New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae:
3.5.2.6;

Protein crystallography data

The structure of New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae, PDB code: 4h0d was solved by Y.Kim, C.Tesar, R.Jedrzejczak, J.Babnigg, T.A.Binkowski, J.Mire, J.Sacchettini, A.Joachimiak, Midwest Center For Structural Genomics(Mcsg), Structures Of Mtb Proteins Conferring Susceptibility To Knownmtb Inhibitors (Mtbi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.77 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.101, 78.606, 133.711, 90.00, 90.00, 90.00
R / Rfree (%) 12 / 15.8

Other elements in 4h0d:

The structure of New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae also contains other interesting chemical elements:

Manganese (Mn) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae (pdb code 4h0d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae, PDB code: 4h0d:

Sodium binding site 1 out of 1 in 4h0d

Go back to Sodium Binding Sites List in 4h0d
Sodium binding site 1 out of 1 in the New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na306

b:17.4
occ:1.00
 OD2 B:ASP95 2.2 22.6 1.0
O B:HOH623 2.4 30.0 1.0
OD2 B:ASP130 2.4 29.7 1.0
O B:HOH405 2.4 18.7 1.0
CG B:ASP95 3.2 19.8 1.0
CG B:ASP130 3.4 26.4 1.0
OD1 B:ASP95 3.4 19.0 1.0
CB B:ASP130 3.7 20.5 1.0
O B:HOH580 4.0 47.5 1.0
O B:GLY127 4.1 15.3 1.0
O B:HOH446 4.2 21.9 1.0
O B:HOH428 4.2 24.6 1.0
OD1 B:ASP130 4.4 24.4 1.0
CB B:ASP95 4.5 17.7 1.0
O B:HOH406 4.5 16.0 1.0
N B:ASP130 4.6 14.6 1.0
CG2 B:VAL155 4.7 17.2 1.0
CA B:ASP130 4.8 17.1 1.0

Reference:

Y.Kim, C.Tesar, R.Jedrzejczak, J.Babnigg, T.A.Binkowski, J.Mire, J.Sacchettini, A.Joachimiak. New Delhi Metallo-Beta-Lactamase-1 Complexed with Mn From Klebsiella Pneumoniae To Be Published.
Page generated: Mon Oct 7 15:42:53 2024

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