Sodium in PDB 2ret: The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus

The structure of The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus, PDB code: 2ret was solved by M.E.Yanez, K.V.Korotkov, J.Abendroth, W.G.J.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.39 / 2.21
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	63.288, 79.145, 82.079, 65.00, 69.19, 69.49
R / Rfree (%)	18.5 / 24.5

The structure of The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus (pdb code 2ret). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus, PDB code: 2ret:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ F:Na4 b:37.2 occ:1.00 OE1 F:GLU146 2.8 22.1 1.0 OE2 F:GLU146 3.0 23.9 1.0 CD F:GLU146 3.3 21.1 1.0 O F:LYS179 4.5 19.8 1.0 O F:LEU178 4.6 20.3 1.0 CG2 F:THR177 4.6 15.5 1.0 CA F:LYS179 4.7 20.5 1.0 CG F:GLU146 4.8 18.6 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ H:Na3 b:29.2 occ:1.00 O H:HOH268 2.1 42.8 1.0 OE1 H:GLU146 2.2 28.9 1.0 O H:HOH273 2.2 46.0 1.0 O H:HOH236 2.5 41.8 1.0 CD H:GLU146 3.2 27.2 1.0 OE2 H:GLU146 3.7 26.5 1.0 O H:LYS179 4.3 20.4 1.0 CG H:GLU146 4.4 25.9 1.0 CA H:LYS179 4.5 21.2 1.0 O H:LEU178 4.6 20.8 1.0 C H:LYS179 4.8 20.6 1.0

M.E.Yanez, K.V.Korotkov, J.Abendroth, W.G.Hol. The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus. J.Mol.Biol. V. 375 471 2008.
ISSN: ISSN 0022-2836
PubMed: 18022192
DOI: 10.1016/J.JMB.2007.10.035