Sodium in PDB 2ra9: Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution

The structure of Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution, PDB code: 2ra9 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.85 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.409, 62.286, 73.247, 90.00, 90.00, 90.00
R / Rfree (%)	16.2 / 19.6

The binding sites of Sodium atom in the Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution (pdb code 2ra9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution, PDB code: 2ra9:

Sodium binding site 1 out of 1 in the Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A DUF1285 Family Protein (SBAL_2486) From Shewanella Baltica OS155 at 1.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na158 b:16.5 occ:1.00 O A:PHE149 2.3 13.4 1.0 O A:HOH266 2.4 15.6 1.0 O A:HOH264 2.4 16.8 1.0 O A:HOH167 2.4 16.9 1.0 O A:ASN147 2.5 13.9 1.0 O A:HOH265 3.2 11.8 1.0 C A:PHE149 3.4 12.6 1.0 C A:ASN147 3.5 13.3 1.0 N A:PHE149 3.7 12.5 1.0 C A:GLU148 3.8 12.8 1.0 CA A:PHE149 4.0 13.7 1.0 O2 A:EDO164 4.1 30.4 1.0 O A:GLU148 4.2 14.4 1.0 N A:GLU148 4.3 12.0 1.0 CA A:ASN147 4.3 11.6 1.0 CB A:PHE149 4.3 14.2 1.0 O A:VAL146 4.4 13.3 1.0 CA A:GLU148 4.4 12.1 1.0 OD1 A:ASN150 4.5 20.2 1.0 N A:ASN150 4.5 14.8 1.0 O A:HOH197 4.6 22.5 1.0 O1 A:EDO164 4.8 20.0 1.0 O A:HOH312 4.9 28.3 1.0 O A:HOH311 5.0 28.8 1.0 CA A:ASN150 5.0 15.3 1.0 CD2 A:PHE149 5.0 19.0 1.0

G.W.Han, C.Bakolitsa, M.D.Miller, A.Kumar, D.Carlton, R.J.Najmanovich, P.Abdubek, T.Astakhova, H.L.Axelrod, C.Chen, H.J.Chiu, T.Clayton, D.Das, M.C.Deller, L.Duan, D.Ernst, J.Feuerhelm, J.C.Grant, A.Grzechnik, L.Jaroszewski, K.K.Jin, H.A.Johnson, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, D.Marciano, D.Mcmullan, A.T.Morse, E.Nigoghossian, L.Okach, R.Reyes, C.L.Rife, N.Sefcovic, H.J.Tien, C.B.Trame, H.Van Den Bedem, D.Weekes, Q.Xu, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Structures of the First Representatives of Pfam Family PF06938 (DUF1285) Reveal A New Fold with Repeated Structural Motifs and Possible Involvement in Signal Transduction. Acta Crystallogr.,Sect.F V. 66 1218 2010.
ISSN: ESSN 1744-3091
PubMed: 20944214
DOI: 10.1107/S1744309109050416