Sodium in PDB 2p7h: Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution

The structure of Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution, PDB code: 2p7h was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.93 / 1.85
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	117.949, 117.949, 150.532, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 18.3

The structure of Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution (pdb code 2p7h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution, PDB code: 2p7h:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na252 b:21.1 occ:1.00 O B:HIS114 2.3 24.6 1.0 OD1 B:ASP116 2.3 22.6 1.0 O B:HOH270 2.4 20.9 1.0 O B:HOH292 3.0 26.6 1.0 CG B:ASP116 3.3 28.1 1.0 C B:HIS114 3.5 22.5 1.0 N B:ASP116 3.5 19.1 1.0 O B:HOH283 3.6 24.9 1.0 C B:ILE115 4.0 20.2 1.0 OD2 B:ASP116 4.0 27.3 1.0 CA B:ILE115 4.0 19.6 1.0 CG B:ARG173 4.2 21.4 1.0 N B:ILE115 4.2 20.6 1.0 CA B:ASP116 4.2 18.9 1.0 CB B:ASP116 4.2 22.2 1.0 O B:HOH334 4.5 34.5 1.0 O B:GLY171 4.5 21.8 1.0 CA B:HIS114 4.6 20.3 1.0 NE B:ARG173 4.8 24.2 1.0 O B:ILE115 4.9 20.9 1.0 CB B:HIS114 4.9 22.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Sam Dependent Methyl-Transferase Type 12 Family Protein (ECA1738) From Pectobacterium Atrosepticum SCRI1043 at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na251 b:24.4 occ:1.00 O D:HIS114 2.3 22.4 1.0 OD1 D:ASP116 2.4 27.5 1.0 O D:HOH279 2.4 23.7 1.0 O D:HOH277 2.9 23.9 1.0 CG D:ASP116 3.3 30.8 1.0 C D:HIS114 3.5 22.0 1.0 N D:ASP116 3.6 20.8 1.0 OD2 D:ASP116 4.0 25.6 1.0 CA D:ILE115 4.0 21.0 1.0 C D:ILE115 4.0 20.2 1.0 CG D:ARG173 4.2 19.1 1.0 N D:ILE115 4.2 18.8 1.0 CB D:ASP116 4.3 23.6 1.0 CA D:ASP116 4.3 20.6 1.0 O D:HOH318 4.4 30.2 1.0 O D:GLY171 4.5 18.0 1.0 CA D:HIS114 4.6 20.2 1.0 NE D:ARG173 4.8 23.7 1.0 CB D:HIS114 4.9 20.1 1.0 O D:ILE115 4.9 21.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.