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Sodium in PDB 2v6u: High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii

Enzymatic activity of High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii

All present enzymatic activity of High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii:
4.2.1.96;

Protein crystallography data

The structure of High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii, PDB code: 2v6u was solved by S.Cameron, S.P.Goldie, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.76 / 1.6
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 120.135, 120.135, 49.773, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii (pdb code 2v6u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii, PDB code: 2v6u:

Sodium binding site 1 out of 1 in 2v6u

Go back to Sodium Binding Sites List in 2v6u
Sodium binding site 1 out of 1 in the High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Crystal Structure of Pterin-4A- Carbinolamine Dehydratase From Toxoplasma Gondii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2104

b:21.5
occ:1.00
 O A:HOH1131 2.3 34.3 1.0
O A:SER77 2.3 13.4 1.0
O A:HOH1117 2.4 29.9 1.0
O A:HOH1136 2.4 24.8 1.0
O A:HOH1114 2.4 22.8 1.0
O A:HOH1119 2.6 21.8 1.0
C A:SER77 3.5 13.7 1.0
O A:HOH1149 3.7 24.2 1.0
OD1 A:ASN64 3.8 19.6 1.0
O A:HIS62 3.9 13.9 1.0
N A:SER77 4.2 12.6 1.0
N A:HIS79 4.2 15.8 1.0
O A:HOH1060 4.3 30.0 1.0
OG A:SER77 4.3 12.2 0.5
O A:HOH1067 4.3 33.9 1.0
N A:THR78 4.4 13.5 1.0
CA A:THR78 4.4 14.1 1.0
O A:HOH1135 4.4 36.8 1.0
CA A:SER77 4.4 12.9 1.0
O A:HOH1132 4.5 25.2 1.0
O A:HOH1116 4.6 36.6 1.0
C A:THR78 4.8 14.6 1.0
CG A:ASN64 4.8 15.2 1.0
O A:HOH1113 4.9 29.1 1.0

Reference:

S.Cameron, S.A.Fyffe, S.P.Goldie, W.N.Hunter. Crystal Structures of Toxoplasma Gondii Pterin-4A- Carbinolamine Dehydratase and Comparisons with Mammalian and Parasite Orthologues. Mol.Biochem.Parasitol. V. 158 131 2008.
ISSN: ISSN 0166-6851
PubMed: 18215430
DOI: 10.1016/J.MOLBIOPARA.2007.12.002
Page generated: Mon Oct 7 04:27:36 2024

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