Sodium in PDB 2nrv: Crystal Structure of the C-Terminal Half of Uvrc

The structure of Crystal Structure of the C-Terminal Half of Uvrc, PDB code: 2nrv was solved by E.Karakas, J.J.Truglio, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.499, 94.630, 132.352, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 25.1

The binding sites of Sodium atom in the Crystal Structure of the C-Terminal Half of Uvrc (pdb code 2nrv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Terminal Half of Uvrc, PDB code: 2nrv:

Sodium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Half of Uvrc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Terminal Half of Uvrc within 5.0Å range: probe atom residue distance (Å) B Occ B:Na559 b:27.8 occ:1.00 O B:HOH764 2.3 27.6 1.0 O B:HOH607 2.3 28.9 1.0 O B:HOH601 2.3 29.7 1.0 O B:HOH681 2.3 38.6 1.0 O B:ILE368 2.3 16.9 1.0 O B:HOH569 2.5 20.4 1.0 C B:ILE368 3.6 17.6 1.0 O B:HOH702 3.9 40.0 1.0 OD2 B:ASP429 4.0 27.3 1.0 NZ B:LYS456 4.0 24.0 1.0 N B:ILE368 4.2 16.9 1.0 OD1 B:ASP367 4.2 20.5 1.0 CA B:ILE368 4.3 16.3 1.0 O B:HOH595 4.4 34.5 1.0 CB B:ILE368 4.5 17.1 1.0 O B:HOH564 4.5 19.8 1.0 OG B:SER369 4.5 19.8 1.0 N B:SER369 4.6 17.7 1.0 OD1 B:ASP405 4.7 27.3 1.0 CA B:SER369 4.7 18.9 1.0 CE B:LYS456 4.8 23.9 1.0 OD2 B:ASP405 4.8 27.0 1.0 CG B:ASP367 4.8 20.3 1.0 OD2 B:ASP367 5.0 19.4 1.0

E.Karakas, J.J.Truglio, D.Croteau, B.Rhau, L.Wang, B.Van Houten, C.Kisker. Structure of the C-Terminal Half of Uvrc Reveals An Rnase H Endonuclease Domain with An Argonaute-Like Catalytic Triad. Embo J. V. 26 613 2007.
ISSN: ISSN 0261-4189
PubMed: 17245438
DOI: 10.1038/SJ.EMBOJ.7601497