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Sodium in PDB, part 311 (files: 12401-12440), PDB 9kmj-9mg3

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 12401-12440 (PDB 9kmj-9mg3).
  1. 9kmj (Na: 2) - Taurine Bound Htaut
    Other atoms: Cl (1);
  2. 9kmm (Na: 2) - Iaa Bound Mtaut
    Other atoms: Cl (1);
  3. 9kot (Na: 1) - Hewl Crystal Soaked in Buffer of PH2.0
    Other atoms: Cl (2);
  4. 9kqz (Na: 2) - Structural Basis For the Polymer-Protein Binding Mechanism of Polyvinyl Alcohol Esterase
    Other atoms: Cl (2);
  5. 9krh (Na: 1) - Human Creatine Transporter
    Other atoms: Cl (1);
  6. 9ktt (Na: 1) - Structure of Taut in Complex with Taurine
    Other atoms: Cl (1);
  7. 9ktu (Na: 1) - Structure of Taut in Complex with Beta-Alanine
    Other atoms: Cl (1);
  8. 9ktv (Na: 1) - Structure of Taut in Complex with Gaba
    Other atoms: Cl (1);
  9. 9kuk (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Oxidized State Under Aerobic Condition
    Other atoms: Zn (2); Cu (6); Xe (14); Fe (4); Mg (2);
  10. 9kul (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Oxidized State Under Anaerobic Condition
    Other atoms: Xe (14); Fe (4); Mg (2); Cu (6); Zn (2);
  11. 9kum (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Reduced State
    Other atoms: Cu (6); Zn (2); Mg (2); Fe (4); Xe (16);
  12. 9kva (Na: 1) - Ecr Ck Protein
  13. 9kw9 (Na: 1) - Crystal Structure of Proline Dipeptidase From Pyrococcus Furiosus Complexed with Co
    Other atoms: Co (2);
  14. 9kwa (Na: 2) - Crystal Structure of Proline Dipeptidase From Pyrococcus Furiosus Complexed with Mn
    Other atoms: Mn (2);
  15. 9kws (Na: 2) - D98N Mutant of A Copper-Containing Nitrite Reductase From Geobacillus Thermodenitrificans
    Other atoms: Cu (5); Cl (1);
  16. 9kx8 (Na: 1) - Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose
    Other atoms: Cl (2);
  17. 9kxw (Na: 1) - Structure of Human B0AT1-ACE2
  18. 9kyo (Na: 2) - Ges Bound Mtaut
    Other atoms: Cl (1);
  19. 9l1k (Na: 2) - Sdaba Yerls Mutant
  20. 9l6z (Na: 5) - Crystal Structure of the L7AE Derivative Protein LS12 in Rna-Free State
  21. 9l71 (Na: 1) - Hewl Crystal Soaked in Buffer of PH12.0
    Other atoms: Cl (2);
  22. 9lj6 (Na: 2) - Crystal Structure of C-Terminal Rigid Fragment Containing Middle and C-Terminal Domains of the Basal Pilin Ebpb From Enterococcus Faecalis.
  23. 9lks (Na: 2) - Crystal Structure of N-Terminal Flexible Domain of the Shaft Pilin Ebpc From Enterococcus Faecalis.
  24. 9lmk (Na: 1) - Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)
    Other atoms: Cl (2);
  25. 9lml (Na: 1) - Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Mosflm)
    Other atoms: Cl (2);
  26. 9lnq (Na: 3) - The Hung Bound to Dna Product Embedding 4PRIMER-OCH3-Du
  27. 9lpy (Na: 1) - X-Ray Structure of GH1 Beta-Glucosidase TD2F2 2F-Glc Complex at Cryogenic Temperature
    Other atoms: F (1);
  28. 9lr7 (Na: 15) - Crystal Structure of the Basal Pilin Ebpb From Enterococcus Faecalis.
  29. 9ls8 (Na: 2) - Crystal Structure of Peptidyl-Trna Hydrolase From Enterococcus Faecium at 1.22 A
  30. 9lty (Na: 4) - Crystal Structure of C-Terminal Stable Fragment of the Shaft Pilin Ebpc From Enterococcus Faecalis
    Other atoms: Mg (2);
  31. 9lxl (Na: 1) - Crystal Structure of GH29 Family Alpha-L-Fucosidase From Fusarium Proliferatum LE1
  32. 9m56 (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Reduced State
    Other atoms: Mg (2); Fe (4); Cu (6); Zn (2);
  33. 9mbe (Na: 4) - Neutron Crystal Structure of Human MTH1(G2K/C87A/C104S Mutant) in Complex with 8-Oxo-Dgtp
  34. 9mbf (Na: 4) - Neutron Crystal Structure of Human MTH1(G2K/C87A/C104S Mutant) in Complex with 2-Oxo-Datp
  35. 9mbg (Na: 5) - 8-Oxo-Dgtp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es Complex
  36. 9mbh (Na: 4) - 8-Oxo-Dgtp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es-3M Complex
    Other atoms: Mn (6);
  37. 9mbk (Na: 4) - 2-Oxo-Datp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es Complex
  38. 9mbl (Na: 4) - 2-Oxo-Datp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es-2M Complex
    Other atoms: Mn (4);
  39. 9me8 (Na: 1) - Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide
  40. 9mg3 (Na: 10) - Structure of Kluyveromyces Lactis Mrna Cap (Guanine-N7) Methyltransferase, ABD1, in Complex with Sinefungin and Gtp
Page generated: Mon Dec 15 11:19:03 2025

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