Sodium in PDB, part 304 (files: 12121-12160),
PDB 9dpo-9erv
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12121-12160 (PDB 9dpo-9erv).
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9dpo (Na: 4) - Bmp-9 Wild-Type Dimer with Radiation Damage in Neutral pH
Other atoms:
Cl (5);
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9dpp (Na: 5) - Bmp-9 Wild-Type Dimer in Acidic pH
Other atoms:
Cl (9);
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9dpq (Na: 6) - Bmp-9 Wild-Type Dimer Without Radiation Damage in Acidic pH
Other atoms:
Cl (10);
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9dpr (Na: 3) - Bmp-9 Wild-Type Dimer with Radiation Damage in Acidic pH
Other atoms:
Cl (10);
-
9dps (Na: 4) - Bmp-9 G389S Dimer Without Radiation Damage in Neutral pH
Other atoms:
Cl (6);
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9dpt (Na: 4) - Bmp-9 G389S Dimer with Radiation Damage in Neutral pH
Other atoms:
Cl (5);
-
9dpu (Na: 1) - Bmp-9 G389S Dimer in Acidic pH
Other atoms:
Cl (5);
-
9dpv (Na: 4) - Bmp-9 K357R G389S Dimer Without Radiation Damage in Neutral pH
Other atoms:
Cl (5);
-
9dpw (Na: 3) - Bmp-9 K357R G389S Dimer with Radiation Damage in Neutral pH
Other atoms:
Cl (9);
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9dpx (Na: 3) - Bmp-9 G389S K357R Dimer in Acidic pH
Other atoms:
Cl (6);
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9dpy (Na: 2) - Bmp-10 with Bmp-9 Crystal Contacts
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9drw (Na: 4) - Myocilin Olf Mutant A427T
Other atoms:
Ca (4);
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9dsb (Na: 3) - Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583
Other atoms:
Cl (11);
K (1);
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9dw6 (Na: 2) - Crystal Structure of Sars-Cov-2 Main Protease (Mpro) C145A Mutant in Complex with Peptide From Human Trna Methyltransferase TRMT1
Other atoms:
Cl (1);
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9dy7 (Na: 8) - Proteus Vulgaris Tryptophan Indole-Lyase Complexed with L-Ethionine and Na+
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9dy8 (Na: 4) - Crystal Structure of Hla-B*18:01 in Complex with Pemtffsvk, An 9-Mer Epitope From Influenza B
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9dys (Na: 2) - X-Ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (NYLON66) Hydrolase NYL50 at Room Temperature Bound to Tetraethylene Glycol
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9e3m (Na: 1) - Cryo-Em Structure of the Human P2X7 Receptor in the Apo Closed State
Other atoms:
Zn (6);
-
9e3q (Na: 1) - Cryo-Em Structure of the Mouse P2X7 Receptor in the Apo Closed State
Other atoms:
Zn (6);
-
9e6u (Na: 2) - Crystal Structure of Human TASPASE1 in Complex with Ligand SMDC1041556
Other atoms:
F (8);
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9e9g (Na: 5) - Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain
Other atoms:
As (2);
Cl (2);
-
9ea4 (Na: 1) - Structure of Citrobacter Bubcd
Other atoms:
Zn (1);
-
9ea5 (Na: 2) - Structure of Citrobacter Bubcd D104A Mutant
-
9eae (Na: 2) - Structure of Citrobacter Bubcd(D104A)-Bubb
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9eav (Na: 2) - Structure of Citrobacter Bubcd(D104A/Y370F)-Bubb-Buba(155-229)
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9eb4 (Na: 1) - Chicken YF1.7*1 Presenting N-Palmitoylated Glycine
Other atoms:
Cl (1);
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9eb5 (Na: 1) - Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023
Other atoms:
Mg (1);
Cl (2);
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9eb6 (Na: 2) - Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein Circ
Other atoms:
Cl (3);
-
9ek6 (Na: 1) - Crystal Structure of Mait Tcr in Complex with MR1-5FU
Other atoms:
Ca (1);
-
9ek7 (Na: 2) - Crystal Structure of Mait Tcr in Complex with MR1-5FDU
Other atoms:
Cl (1);
-
9emf (Na: 1) - Kod-H4 Dna Polymerase Mutant in A Binary Complex with Dna:Dna Containing One Hna Nucleotide
Other atoms:
Mg (5);
-
9end (Na: 2) - Crystal Structure of Methanopyrus Kandleri Malate Dehydrogenase Mutant 3
Other atoms:
Cl (1);
-
9ent (Na: 3) - Ssx Structure of Autotaxin in Cryogenic Conditions
Other atoms:
Zn (2);
Ca (1);
I (15);
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9eo4 (Na: 1) - Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine
Other atoms:
Cl (1);
-
9epl (Na: 1) - Mpro From Sars-Cov-2 with 298Q Mutation
-
9eqh (Na: 1) - WWP2 WW2-2,3-Linker-Hect (WWP2-Lh)
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9erj (Na: 3) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii Reduced with Low Potential Ferredoxin
Other atoms:
Fe (42);
-
9erk (Na: 7) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii Reduced with Low Potential Ferredoxin (Consensus Map)
Other atoms:
Fe (42);
-
9erl (Na: 3) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii in Apo State
Other atoms:
Fe (42);
-
9erv (Na: 1) - Structure of Salmonella Caprel Bound to BAS11 GP54
Other atoms:
Mg (1);
Page generated: Mon Dec 15 11:18:47 2025
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