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Sodium in PDB, part 304 (files: 12121-12160), PDB 9dpp-9ewc

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 12121-12160 (PDB 9dpp-9ewc).
  1. 9dpp (Na: 5) - Bmp-9 Wild-Type Dimer in Acidic pH
    Other atoms: Cl (9);
  2. 9dpq (Na: 6) - Bmp-9 Wild-Type Dimer Without Radiation Damage in Acidic pH
    Other atoms: Cl (10);
  3. 9dpr (Na: 3) - Bmp-9 Wild-Type Dimer with Radiation Damage in Acidic pH
    Other atoms: Cl (10);
  4. 9dps (Na: 4) - Bmp-9 G389S Dimer Without Radiation Damage in Neutral pH
    Other atoms: Cl (6);
  5. 9dpt (Na: 4) - Bmp-9 G389S Dimer with Radiation Damage in Neutral pH
    Other atoms: Cl (5);
  6. 9dpu (Na: 1) - Bmp-9 G389S Dimer in Acidic pH
    Other atoms: Cl (5);
  7. 9dpv (Na: 4) - Bmp-9 K357R G389S Dimer Without Radiation Damage in Neutral pH
    Other atoms: Cl (5);
  8. 9dpw (Na: 3) - Bmp-9 K357R G389S Dimer with Radiation Damage in Neutral pH
    Other atoms: Cl (9);
  9. 9dpx (Na: 3) - Bmp-9 G389S K357R Dimer in Acidic pH
    Other atoms: Cl (6);
  10. 9dpy (Na: 2) - Bmp-10 with Bmp-9 Crystal Contacts
  11. 9dsb (Na: 3) - Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583
    Other atoms: Cl (11); K (1);
  12. 9dw6 (Na: 2) - Crystal Structure of Sars-Cov-2 Main Protease (Mpro) C145A Mutant in Complex with Peptide From Human Trna Methyltransferase TRMT1
    Other atoms: Cl (1);
  13. 9dy7 (Na: 8) - Proteus Vulgaris Tryptophan Indole-Lyase Complexed with L-Ethionine and Na+
  14. 9dy8 (Na: 4) - Crystal Structure of Hla-B*18:01 in Complex with Pemtffsvk, An 9-Mer Epitope From Influenza B
  15. 9dys (Na: 2) - X-Ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (NYLON66) Hydrolase NYL50 at Room Temperature Bound to Tetraethylene Glycol
  16. 9e9g (Na: 5) - Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain
    Other atoms: As (2); Cl (2);
  17. 9eb4 (Na: 1) - Chicken YF1.7*1 Presenting N-Palmitoylated Glycine
    Other atoms: Cl (1);
  18. 9eb5 (Na: 1) - Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023
    Other atoms: Mg (1); Cl (2);
  19. 9eb6 (Na: 2) - Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein Circ
    Other atoms: Cl (3);
  20. 9ek6 (Na: 1) - Crystal Structure of Mait Tcr in Complex with MR1-5FU
    Other atoms: Ca (1);
  21. 9ek7 (Na: 2) - Crystal Structure of Mait Tcr in Complex with MR1-5FDU
    Other atoms: Cl (1);
  22. 9end (Na: 2) - Crystal Structure of Methanopyrus Kandleri Malate Dehydrogenase Mutant 3
    Other atoms: Cl (1);
  23. 9ent (Na: 3) - Ssx Structure of Autotaxin in Cryogenic Conditions
    Other atoms: Zn (2); Ca (1); I (15);
  24. 9eo4 (Na: 1) - Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine
    Other atoms: Cl (1);
  25. 9epl (Na: 1) - Mpro From Sars-Cov-2 with 298Q Mutation
  26. 9eqh (Na: 1) - WWP2 WW2-2,3-Linker-Hect (WWP2-Lh)
  27. 9erj (Na: 3) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii Reduced with Low Potential Ferredoxin
    Other atoms: Fe (42);
  28. 9erk (Na: 7) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii Reduced with Low Potential Ferredoxin (Consensus Map)
    Other atoms: Fe (42);
  29. 9erl (Na: 3) - Cryo-Em Structure of Sodium Pumping Rnf Complex From Acetobacterium Woodii in Apo State
    Other atoms: Fe (42);
  30. 9erv (Na: 1) - Structure of Salmonella Caprel Bound to BAS11 GP54
    Other atoms: Mg (1);
  31. 9etn (Na: 1) - Crystal Structure of Murine CRTAC1
    Other atoms: Ca (6); K (3);
  32. 9eu1 (Na: 1) - GH29A Alpha-L-Fucosidase
    Other atoms: Cl (1);
  33. 9eu2 (Na: 1) - GH29A Alpha-L-Fucosidase
    Other atoms: Zn (3);
  34. 9eu5 (Na: 2) - Ssx Structure of Autotaxin at Room Temperature
    Other atoms: I (15); Zn (9); Ca (1);
  35. 9eup (Na: 2) - Inhibitor-Free Outward-Open Structure of Drosophila Dopamine Transporter
    Other atoms: Cl (1);
  36. 9evi (Na: 2) - Crystal Structure of Candida Antarctica Lipase B with the Putative Pro-Peptide Region
  37. 9evj (Na: 1) - Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal
    Other atoms: Ca (2); Cl (6); Mn (1);
  38. 9evk (Na: 1) - Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1
    Other atoms: Ca (2); Cl (6);
  39. 9ewb (Na: 2) - Dna Polymerase Lambda I493R, Ttp:at CA2+ Ground State Ternary Complex
    Other atoms: Ca (1);
  40. 9ewc (Na: 3) - Dna Polymerase Lambda I493R 528-530 Ney, Ttp:at CA2+ Ground State Ternary Complex
    Other atoms: Ca (1);
Page generated: Sat Aug 23 06:32:55 2025

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