Sodium in PDB, part 297 (files: 11841-11880),
PDB 8vfb-8vn3
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11841-11880 (PDB 8vfb-8vn3).
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8vfb (Na: 1) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Da Base-Paired with Fapydg
Other atoms:
Mn (2);
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8vfc (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal T Base-Paired with Fapydg
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8vfe (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A T
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8vff (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Da
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8vfh (Na: 1) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Dc
Other atoms:
Mg (2);
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8vfi (Na: 2) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Da
Other atoms:
Mg (2);
Cl (3);
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8vfj (Na: 3) - Polymerase Beta Host Guest Complex Containing Fapydg Base Paired with Tmp
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8vfk (Na: 1) - Crystal Structure of Delta 109-117 D-Dopachrome Tautomerase (D-Dt)
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8vg9 (Na: 8) - Crystallographic Structure of Ruminococcus Champanellensis Xylanase (RCXYN30A)
Other atoms:
F (2);
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8vh7 (Na: 4) - Crystal Structure of Heparosan Synthase 2 From Pasteurella Multocida at 1.98 A
Other atoms:
Mn (4);
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8vh8 (Na: 4) - Crystal Structure of Heparosan Synthase 2 From Pasteurella Multocida at 2.85 A
Other atoms:
Ca (1);
Mn (8);
Cl (18);
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8vhu (Na: 1) - Crystal Structure of Datp Bound E. Coli Class Ia Ribonucleotide Reductase Alpha Construct Fused with the C-Terminal Tail of E. Coli Class Ia Beta Subunit
Other atoms:
Mg (3);
Cl (6);
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8vi8 (Na: 11) - Engineered Glutamine Binding Protein and A Cobaloxime Ligand - No Gln Bound
Other atoms:
Co (6);
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8vig (Na: 1) - Egtb-IV From Geminocystis Sp. Isolate SKYG4, An Ergothioneine- Biosynthetic Type IV Sulfoxide Synthase in Complex with Hercynine
Other atoms:
Fe (1);
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8vih (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with Hercynine
Other atoms:
Cl (2);
Fe (2);
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8vii (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with Cysteine and Hercynine
Other atoms:
Mn (2);
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8vik (Na: 2) - Egtb-IV From Crocosphaera Subtropica, A Type IV Sulfoxide Synthase Involved in Ergothioneine Biosynthesis
Other atoms:
Cl (2);
Fe (2);
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8vil (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with N,N-Dimethyl-Histidine
Other atoms:
Fe (2);
Cl (2);
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8vj2 (Na: 1) - Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus
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8vjt (Na: 2) - Structure of the Poly-Ug Quadruplex (Gugugu)4
Other atoms:
K (7);
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8vju (Na: 2) - Structure of Human Neurolysin in Complex with Dynorphin A13 Peptide
Other atoms:
Zn (2);
Cl (1);
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8vl8 (Na: 10) - Salmonella Enterica Typhimurium Taxis to Serine and Repellents (Tsr) Ligand-Binding Domain with L-Ser, pH 7
Other atoms:
K (1);
Cl (7);
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8vlj (Na: 1) - Crystal Structure of the Cacodylate-Bound Yeast Cytosine Deaminase (Closed Form)
Other atoms:
As (2);
Zn (2);
-
8vme (Na: 1) - Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide
Other atoms:
Mg (2);
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8vmo (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH7.0 (K+ Mes) with Na+
Other atoms:
Zn (4);
-
8vmp (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 10S
Other atoms:
Zn (4);
-
8vmq (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 20S
Other atoms:
Mg (1);
Zn (4);
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8vmr (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 40S
Other atoms:
Zn (4);
Mg (1);
-
8vms (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 80S
Other atoms:
Mg (2);
Zn (4);
-
8vmt (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 160S
Other atoms:
Zn (4);
Mg (2);
-
8vmu (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 320S
Other atoms:
Zn (4);
Mg (2);
-
8vmv (Na: 1) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 600S
Other atoms:
Mg (2);
Zn (4);
-
8vmw (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH6.0 (K+ Mes) with Na+
Other atoms:
Zn (4);
-
8vmx (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 10S
Other atoms:
Zn (4);
-
8vmy (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 20S
Other atoms:
Mg (1);
Zn (4);
-
8vmz (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 40S
Other atoms:
Mg (2);
Zn (4);
-
8vn0 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 80S
Other atoms:
Zn (4);
Mg (2);
-
8vn1 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 160S
Other atoms:
Zn (4);
Mg (2);
-
8vn2 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 320S
Other atoms:
Zn (4);
Mg (2);
-
8vn3 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 600S
Other atoms:
Zn (4);
Mg (2);
Page generated: Tue Feb 25 11:42:48 2025
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