Sodium in PDB, part 297 (files: 11841-11880),
PDB 8v1v-8vl8
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11841-11880 (PDB 8v1v-8vl8).
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8v1v (Na: 1) - Human Dna Ligase I F872L Bound to Adenylated Nicked Dna
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8v2t (Na: 1) - Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148591
Other atoms:
F (2);
Cl (1);
Zn (1);
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8v4h (Na: 1) - X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol
Other atoms:
Cl (2);
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8v4j (Na: 1) - Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233
Other atoms:
Zn (1);
Cl (1);
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8v4v (Na: 2) - Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae
Other atoms:
Cl (1);
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8v51 (Na: 1) - Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr
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8v6k (Na: 4) - Apo-State Cryo-Em Structure of Human TRPV3 in CNW30 Nanodiscs
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8v6l (Na: 3) - Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs
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8v6m (Na: 3) - Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs
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8v6n (Na: 1) - Open-State Cryo-Em Structure of Human TRPV3 in Presence of 2-Apb in CNW30 Nanodiscs
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8v6o (Na: 3) - Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs
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8v8y (Na: 1) - Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)
Other atoms:
Mg (2);
Cl (3);
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8va3 (Na: 1) - Crystal Structure of CAPGH3B Enzyme Retrieved From Capybara Gut Metagenome
Other atoms:
Mg (2);
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8vb3 (Na: 5) - Dienelactone Hydrolase From Solimonas Fluminis
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8vdw (Na: 1) - X-Ray Crystal Structure of the Biotin Synthase From V. Parvula
Other atoms:
Fe (16);
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8vf8 (Na: 3) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Dc Base-Paired with Fapydg
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8vf9 (Na: 3) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Da Base-Paired with Fapydg
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8vfa (Na: 2) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Dc Base-Paired with Fapydg
Other atoms:
Mn (2);
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8vfb (Na: 1) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Da Base-Paired with Fapydg
Other atoms:
Mn (2);
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8vfc (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal T Base-Paired with Fapydg
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8vfe (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A T
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8vff (Na: 2) - Binary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Da
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8vfh (Na: 1) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Dc
Other atoms:
Mg (2);
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8vfi (Na: 2) - Ternary Dna Polymerase Beta Bound to Dna Containing Primer Terminal Fapydg Base-Paired with A Da
Other atoms:
Mg (2);
Cl (3);
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8vfj (Na: 3) - Polymerase Beta Host Guest Complex Containing Fapydg Base Paired with Tmp
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8vfk (Na: 1) - Crystal Structure of Delta 109-117 D-Dopachrome Tautomerase (D-Dt)
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8vg9 (Na: 8) - Crystallographic Structure of Ruminococcus Champanellensis Xylanase (RCXYN30A)
Other atoms:
F (2);
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8vh7 (Na: 4) - Crystal Structure of Heparosan Synthase 2 From Pasteurella Multocida at 1.98 A
Other atoms:
Mn (4);
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8vh8 (Na: 4) - Crystal Structure of Heparosan Synthase 2 From Pasteurella Multocida at 2.85 A
Other atoms:
Ca (1);
Mn (8);
Cl (18);
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8vhu (Na: 1) - Crystal Structure of Datp Bound E. Coli Class Ia Ribonucleotide Reductase Alpha Construct Fused with the C-Terminal Tail of E. Coli Class Ia Beta Subunit
Other atoms:
Mg (3);
Cl (6);
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8vi8 (Na: 11) - Engineered Glutamine Binding Protein and A Cobaloxime Ligand - No Gln Bound
Other atoms:
Co (6);
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8vig (Na: 1) - Egtb-IV From Geminocystis Sp. Isolate SKYG4, An Ergothioneine- Biosynthetic Type IV Sulfoxide Synthase in Complex with Hercynine
Other atoms:
Fe (1);
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8vih (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with Hercynine
Other atoms:
Cl (2);
Fe (2);
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8vii (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with Cysteine and Hercynine
Other atoms:
Mn (2);
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8vik (Na: 2) - Egtb-IV From Crocosphaera Subtropica, A Type IV Sulfoxide Synthase Involved in Ergothioneine Biosynthesis
Other atoms:
Cl (2);
Fe (2);
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8vil (Na: 2) - Egtb-IV From Crocosphaera Subtropica, An Ergothioneine-Biosynthetic Type IV Sulfoxide Synthase in Complex with N,N-Dimethyl-Histidine
Other atoms:
Fe (2);
Cl (2);
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8vj2 (Na: 1) - Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus
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8vjt (Na: 2) - Structure of the Poly-Ug Quadruplex (Gugugu)4
Other atoms:
K (7);
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8vju (Na: 2) - Structure of Human Neurolysin in Complex with Dynorphin A13 Peptide
Other atoms:
Zn (2);
Cl (1);
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8vl8 (Na: 10) - Salmonella Enterica Typhimurium Taxis to Serine and Repellents (Tsr) Ligand-Binding Domain with L-Ser, pH 7
Other atoms:
K (1);
Cl (7);
Page generated: Mon Dec 15 11:18:31 2025
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