Sodium in PDB 8v51: Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr

The structure of Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr, PDB code: 8v51 was solved by D.R.Littler, J.Rossjohn, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.50 / 2.10
Space group	I 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	149.269, 46.155, 161.964, 90, 101.4, 90
R / Rfree (%)	21 / 24.4

The binding sites of Sodium atom in the Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr (pdb code 8v51). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr, PDB code: 8v51:

Sodium binding site 1 out of 1 in the Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Hla-B*35:01-NP10 with D1 Tcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:66.7 occ:1.00 O1 A:PO4303 2.4 73.5 1.0 O A:HOH513 2.8 50.0 1.0 CE1 A:HIS93 3.5 23.8 1.0 P A:PO4303 3.5 72.1 1.0 O A:HOH411 3.5 29.4 1.0 O3 A:PO4303 3.6 70.2 1.0 NE2 A:HIS93 3.8 33.2 1.0 CG A:GLN87 3.9 30.7 1.0 NE2 A:GLN87 4.0 25.2 1.0 O4 A:PO4303 4.0 83.9 1.0 CD A:GLN87 4.2 28.8 1.0 CB A:GLN87 4.3 40.7 1.0 ND1 A:HIS93 4.7 30.0 1.0 O2 A:PO4303 4.8 81.4 1.0

S.Quinones-Parra, D.R.Littler, J.Rossjohn, K.Kedzierska, S.Gras. Molecular Determinants of Cross-Strain Influenza A Virus Recognition By T-Cell Receptors To Be Published.