Sodium in PDB, part 278 (files: 11081-11120),
PDB 8dcl-8drz
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11081-11120 (PDB 8dcl-8drz).
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8dcl (Na: 2) - Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36
Other atoms:
K (2);
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8dct (Na: 1) - Lysozyme Cluster 3 Dual Apo Structure
Other atoms:
Cl (5);
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8dcu (Na: 1) - Lysozyme Cluster 0028 (Benzamidine Ligand)
Other atoms:
Cl (5);
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8dcv (Na: 1) - Lysozyme Cluster 0043, Nag Ligand
Other atoms:
Cl (5);
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8dcw (Na: 1) - Lysozyme Cluster 0062 (Nag and Benzamidine Ligands)
Other atoms:
Cl (5);
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8ddl (Na: 1) - Sars-Cov-2 Main Protease (Mpro) H163A Mutant Apo Structure
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8ddq (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of Soluble Gbg, Focused on Channel
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8ddr (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Absence of PIP2
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8dds (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1
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8ddt (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2
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8ddu (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE3
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8ddv (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE4
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8ddx (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in Complex with Gbg in the Presence of PIP2, Tethered By Alfa-Nanobody
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8de3 (Na: 2) - Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine
Other atoms:
Cl (1);
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8de4 (Na: 2) - Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine
Other atoms:
Cl (1);
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8dek (Na: 1) - The Structure of the Glycopeptidase Catalytic Domain Including the Linker of AMUC_1438
Other atoms:
Zn (2);
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8df2 (Na: 12) - The Structure of the 'Alt' Construct of the AMUC_1438 Glycopeptidase
Other atoms:
Ca (4);
Zn (4);
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8dhl (Na: 2) - Tannerella Forsythia Beta-Glucuronidase (L2)
Other atoms:
Ca (4);
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8dir (Na: 3) - The Complex Structure Between Human IGG1 Fc and Its High Affinity Receptor Fcgri H174R Variant
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8djf (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Tetrahedral Intermediate
Other atoms:
Ca (1);
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8djr (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor
Other atoms:
Fe (1);
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8djs (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - One Ascorbate Complex
Other atoms:
Fe (1);
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8djt (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Four Ascorbates Complex
Other atoms:
Fe (1);
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8dju (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Bicyclic Dehydroascorbic Acid Complex
Other atoms:
Fe (1);
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8djw (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Hydroperoxo Complex
Other atoms:
Fe (1);
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8djx (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Compound II
Other atoms:
Fe (1);
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8djz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
Other atoms:
Ca (1);
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8dk0 (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
Other atoms:
Ca (1);
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8dl1 (Na: 1) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
Other atoms:
Mn (4);
Ca (4);
Cl (1);
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8dla (Na: 8) - CLPP2 From Chlamydia Trachomatis Bound By MAS1-12
Other atoms:
F (18);
Cl (6);
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8dmr (Na: 1) - Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose
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8dn0 (Na: 1) - E.Coli Dsba in Complex with N-(2-Fluorophenyl)-5-Methylisoxazole-3- Carboxamide
Other atoms:
F (2);
Cu (1);
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8dop (Na: 6) - Crystal Structure of 2,3-Diketo-5-Methylthiopentyl-1-Phosphate Enolase-Phosphatase From Klebsiella Aerogenes (P1 Form)
Other atoms:
I (12);
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8dq2 (Na: 4) - X-Ray Crystal Structure of Hansschlegelia Quercus Lanmodulin (Lanm) with Lanthanum (III) Bound at pH 7
Other atoms:
La (12);
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8dqm (Na: 4) - Crystal Structure of Isoaspartyl Aminopeptidase From Roseivivax Halodurans Dsm 15395
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8dr9 (Na: 2) - Crystal Structure of Human ALDH2 in Complex with Nad+ and Peg Mme 550
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8drr (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP4-NSP5 (C4) Cut Site Sequence
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8drw (Na: 12) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP9-NSP10 (C9) Cut Site Sequence
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8drx (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP10-NSP11 (C10) Cut Site Sequence (Form 2)
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8drz (Na: 4) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP13-NSP14 (C13) Cut Site Sequence
Page generated: Mon Aug 18 13:50:39 2025
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