Sodium in PDB, part 254 (files: 10121-10160),
PDB 7md6-7mz6
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10121-10160 (PDB 7md6-7mz6).
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7md6 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103N Mutant Co-Crystallized with NL1
Other atoms:
Br (7);
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7md8 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103N Mutant Co-Crystallized with NL2
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7md9 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant
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7mda (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant Co-Crystallized with NL1
Other atoms:
Br (2);
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7mdb (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant Co-Crystallized with NL2
Other atoms:
As (2);
Br (2);
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7me8 (Na: 1) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with N-(4'-Trifluoromethoxybenzoyl)-2- Amino-1-Ethylphosphate (F6F) Inhibitor at the Beta-Site, Sodium Ion at the Metal Coordination Site and Dual Beta-Q114 Rotamer Conformation at 1.60 Angstrom Resolution
Other atoms:
F (3);
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7mfp (Na: 2) - Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine
Other atoms:
Cl (8);
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7mfq (Na: 2) - Crystal Structure of the L136 Aminotransferase From Acanthamoeba Polyphaga Mimivirus in Complex with the Tdp-Viosamine External Aldimine
Other atoms:
Cl (8);
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7mgu (Na: 5) - Improved Ligand Discovery Using Micro-Beam Data Collection at the Edge of Protein Crystals
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7mij (Na: 2) - Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius
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7mik (Na: 4) - Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 42 Degrees Celsius
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7mil (Na: 1) - Mouse TRPV3 in MSP2N2 Nanodiscs, Sensitized State at 42 Degrees Celsius
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7mim (Na: 4) - Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 4 Degrees Celsius
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7min (Na: 4) - Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius
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7mio (Na: 1) - Mouse TRPV3 in CNW11 Nanodiscs, Open State at 42 Degrees Celsius
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7mis (Na: 1) - Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex
Other atoms:
Mg (2);
Ca (1);
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7mj5 (Na: 6) - Complex of Human Thrombin with Xc-43
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7mjc (Na: 2) - Crystal Structure Analysis of ALDH1B1
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7mjd (Na: 2) - Crystal Structure Analysis of ALDH1B1
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7mjx (Na: 3) - Miab in the Complex with 5'-Deoxyadenosine, Methionine and Rna
Other atoms:
Fe (14);
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7mjz (Na: 1) - The Structure of Miab with Pentasulfide Bridge
Other atoms:
Fe (8);
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7mky (Na: 4) - Sars-Cov-2 Frameshifting Pseudoknot Rna
Other atoms:
Mg (9);
K (2);
Co (1);
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7ml9 (Na: 1) - The MPP75AA1.1 Beta-Pore-Forming Protein From Brevibacillus Laterosporus
Other atoms:
Sm (2);
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7mlr (Na: 1) - X-Ray Crystal Structure of Human BRD4(D1) in Complex with 2-(4-{5-[6- (3,5-Dimethylphenoxy)Pyridin-2-Yl]-4-Methyl-1H-1,2,3-Triazol-1- Yl}Piperidin-1-Yl)-N,N-Dimethylethan-1-Amine (DW34)
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7mq3 (Na: 1) - C9A N55A Streptococcus Pneumoniae Cstr in the Reduced State
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7mrp (Na: 4) - Microed Structure of Lysozyme From Milled Crystals at 1.75A
Other atoms:
Cl (1);
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7mw7 (Na: 1) - Crystal Structure of P1G Mutant of D-Dopachrome Tautomerase
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7mxq (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (R-1)
Other atoms:
Mn (2);
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7mxr (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (R-2)
Other atoms:
Mn (3);
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7mxs (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Cr)
Other atoms:
Mn (4);
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7mxt (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Cmr)
Other atoms:
Mn (3);
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7mxu (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Flap Dna (CF2)
Other atoms:
Mn (3);
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7mxv (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Ur)
Other atoms:
Mn (4);
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7mz0 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna
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7mz1 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with Dza in the Template Base Paired with Incoming Non-Hydrolyzable Ttp
Other atoms:
Mg (2);
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7mz2 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with Dza at N-1 of the Template Base Paired with Incoming Dttp
Other atoms:
Mg (2);
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7mz3 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 3-Deaza-3- Methyladenine (3DMEA) As the Template Base in A 1-Nucleotide Gapped Dna
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7mz4 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 3-Deaza-3- Methyladenine (3DMEA) in the Template Base Paired with Incoming Dttp
Other atoms:
Mg (2);
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7mz5 (Na: 3) - Cryo-Em Structure of Rtx-Bound Full-Length TRPV1 in C2 State
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7mz6 (Na: 1) - Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi
Page generated: Mon Dec 15 11:16:50 2025
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