Sodium in PDB 7mis: Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex

The structure of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	1 atom

The binding sites of Sodium atom in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex (pdb code 7mis). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex, PDB code: 7mis:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1004 b:20.7 occ:1.00 HE A:ARG522 2.3 19.0 1.0 H A:ASN733 2.6 27.7 1.0 HG2 A:ARG522 3.1 19.0 1.0 NE A:ARG522 3.1 19.0 1.0 HE1 A:HIS492 3.4 17.1 1.0 N A:ASN733 3.5 27.7 1.0 HA A:ASN733 3.5 27.7 1.0 HD3 A:ARG522 3.6 19.0 1.0 HH21 A:ARG522 3.6 19.0 1.0 CE1 A:HIS492 3.6 17.1 1.0 HB A:THR493 3.6 19.8 1.0 HA A:TYR732 3.7 26.7 1.0 CD A:ARG522 3.7 19.0 1.0 HE2 A:HIS492 3.7 17.1 1.0 NE2 A:HIS492 3.8 17.1 1.0 CG A:ARG522 3.8 19.0 1.0 H5'2 C:AMP2000 3.9 16.0 1.0 HD1 A:TYR732 3.9 26.7 1.0 CA A:ASN733 4.0 27.7 1.0 CZ A:ARG522 4.1 19.0 1.0 CD1 A:TYR732 4.1 26.7 1.0 NH2 A:ARG522 4.1 19.0 1.0 HG1 A:THR493 4.2 19.8 1.0 HE1 A:TYR732 4.3 26.7 1.0 CE1 A:TYR732 4.3 26.7 1.0 HB3 A:ARG522 4.3 19.0 1.0 H A:ARG522 4.4 19.0 1.0 OG1 A:THR493 4.4 19.8 1.0 ND1 A:HIS492 4.4 17.1 1.0 O A:HIS492 4.4 17.1 1.0 CB A:THR493 4.4 19.8 1.0 C A:TYR732 4.5 26.7 1.0 CA A:TYR732 4.5 26.7 1.0 HG3 A:ARG522 4.5 19.0 1.0 O2P C:AMP2000 4.6 16.0 1.0 HD2 A:ARG522 4.6 19.0 1.0 CB A:ARG522 4.7 19.0 1.0 CD2 A:HIS492 4.7 17.1 1.0 H A:ARG734 4.7 26.5 1.0 CG A:TYR732 4.7 26.7 1.0 HD1 A:HIS492 4.8 17.1 1.0 C5' C:AMP2000 4.9 16.0 1.0 O A:GLY731 4.9 23.6 1.0 HH22 A:ARG522 5.0 19.0 1.0

A.Osinski, M.Black, K.Pawlowski, Z.Chen, Y.Li, V.Tagliabracci. Structural and Mechanistic Basis For Protein Glutamylation By the Kinase Fold To Be Published.