Sodium in PDB 9mt1: 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5

The structure of 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5, PDB code: 9mt1 was solved by L.Zafreen, L.-S.Huang, P.Luemmen, E.A.Berry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.19 / 1.41
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	58.222, 34.152, 105.071, 90, 105.04, 90
R / Rfree (%)	15.9 / 18.5

The structure of 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5 also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Sodium atom in the 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5 (pdb code 9mt1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5, PDB code: 9mt1:

Sodium binding site 1 out of 1 in the 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.53 A Crystal Structure of Housefly Cytochrome C at pH 6.5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:13.4 occ:0.50 HD22 B:ASN60 2.4 23.5 1.0 HB3 B:ASN60 2.8 16.2 1.0 O B:HOH428 3.1 23.6 1.0 HA2 B:GLY37 3.1 20.1 0.0 HA2 B:GLY37 3.1 20.1 1.0 ND2 B:ASN60 3.2 19.6 1.0 CB B:ASN60 3.5 13.4 1.0 HG22 B:THR58 3.5 22.8 1.0 HB2 B:ASN60 3.6 16.2 1.0 HG21 B:THR58 3.8 22.8 1.0 HD21 B:ASN60 3.8 23.5 1.0 CG B:ASN60 3.8 16.8 1.0 H B:GLY37 3.9 19.1 0.0 H B:GLY37 3.9 19.1 1.0 CA B:GLY37 4.0 16.8 0.0 CA B:GLY37 4.0 16.8 1.0 CG2 B:THR58 4.1 19.0 1.0 N B:GLY37 4.2 16.0 0.0 N B:GLY37 4.2 16.0 1.0 HA3 B:GLY37 4.3 20.1 0.0 O B:TRP59 4.3 17.1 1.0 HA3 B:GLY37 4.3 20.1 1.0 HG23 B:THR58 4.7 22.8 1.0 O B:HOH345 4.8 21.0 1.0 CA B:ASN60 4.8 17.4 1.0 HA B:ASN60 5.0 20.9 1.0 HB B:THR58 5.0 23.1 1.0

L.Zafreen, L.-S.Huang, P.Luemmen, E.A.Berry. Crystal Structure of Insect Cytochrome C at Different pH Values. To Be Published.