Atomistry » Sodium » PDB 9icm-9mva » 9lmk
Atomistry »
  Sodium »
    PDB 9icm-9mva »
      9lmk »

Sodium in PDB 9lmk: Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)

Enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)

All present enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds):
3.2.1.17;

Protein crystallography data

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds), PDB code: 9lmk was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.99 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.18, 79.18, 38.35, 90, 90, 90
R / Rfree (%) 18.3 / 21.4

Other elements in 9lmk:

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) (pdb code 9lmk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds), PDB code: 9lmk:

Sodium binding site 1 out of 1 in 9lmk

Go back to Sodium Binding Sites List in 9lmk
Sodium binding site 1 out of 1 in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:26.3
occ:1.00
 O A:SER60 2.4 25.4 1.0
O A:CYS64 2.4 23.5 1.0
O A:HOH377 2.4 31.7 1.0
O A:ARG73 2.5 29.8 1.0
OG A:SER72 2.5 30.8 1.0
O A:HOH350 2.6 27.6 1.0
CB A:SER72 3.3 32.0 1.0
C A:CYS64 3.5 21.6 1.0
C A:ARG73 3.5 29.1 1.0
C A:SER60 3.6 23.2 1.0
CA A:ASN65 3.9 23.2 1.0
N A:ARG73 4.0 29.8 1.0
N A:ASN65 4.1 22.7 1.0
C A:SER72 4.1 34.8 1.0
CA A:SER60 4.2 21.4 1.0
CB A:SER60 4.3 22.1 1.0
CA A:SER72 4.4 34.0 1.0
CA A:ARG73 4.4 32.4 1.0
N A:ASN74 4.4 27.1 1.0
N A:CYS64 4.4 22.3 1.0
CA A:ASN74 4.6 26.6 1.0
C A:ARG61 4.6 29.6 1.0
CA A:CYS64 4.6 22.1 1.0
O A:SER72 4.6 34.4 1.0
O A:ARG61 4.6 28.2 1.0
N A:ARG61 4.6 22.0 1.0
CB A:ASN74 4.7 27.1 1.0
O A:HOH379 4.7 41.8 1.0
CB A:THR69 4.8 26.9 1.0
N A:ASP66 4.8 21.5 1.0
CB A:ASN65 4.8 26.9 1.0
N A:TRP62 4.8 25.1 1.0
CA A:ARG61 4.8 28.9 1.0
O A:HOH378 4.8 27.1 1.0
OD1 A:ASN65 4.9 33.1 1.0
C A:ASN65 4.9 22.8 1.0
O A:THR69 5.0 32.0 1.0
N A:TRP63 5.0 23.5 1.0
O A:HOH376 5.0 44.5 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Tue Feb 25 11:44:00 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy