Sodium in PDB 8x1x: Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid

All present enzymatic activity of Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid:
3.4.19.12;

The structure of Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid, PDB code: 8x1x was solved by S.Choudhary, S.Verma, P.Kumar, S.Tomar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.84 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.732, 81.732, 133.689, 90, 90, 120
R / Rfree (%)	23.9 / 28.4

The binding sites of Sodium atom in the Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid (pdb code 8x1x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid, PDB code: 8x1x:

Sodium binding site 1 out of 1 in the Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Na407 b:72.9 occ:1.00 C11 A:4OA403 3.2 90.8 1.0 O A:LYS306 3.7 41.5 1.0 CA A:GLU307 3.7 49.2 1.0 C A:GLU307 3.8 50.5 1.0 OD1 A:ASN308 3.9 58.4 1.0 C A:LYS306 3.9 45.8 1.0 C19 A:4OA403 3.9 90.4 1.0 N A:ASN308 3.9 49.1 1.0 N A:GLU307 3.9 47.7 1.0 OE2 A:GLU307 4.0 55.1 1.0 C12 A:4OA403 4.0 84.6 1.0 CE A:LYS306 4.2 44.5 1.0 O A:GLU307 4.3 52.2 1.0 C9 A:4OA403 4.3 90.9 1.0 CB A:ASN308 4.3 49.2 1.0 CG A:ASN308 4.4 54.3 1.0 CG A:LYS306 4.5 44.4 1.0 C10 A:4OA403 4.6 90.6 1.0 C13 A:4OA403 4.6 84.7 1.0 CB A:LYS306 4.7 43.0 1.0 CA A:ASN308 4.8 47.0 1.0 C8 A:4OA403 4.8 87.5 1.0 C1 A:4OA403 4.8 69.3 1.0 CA A:LYS306 4.9 42.9 1.0 O4A A:4OA403 4.9 76.0 1.0

S.Choudhary, S.Verma, P.Kumar, S.Tomar. Sars-Cov-2 Papain Like Protease (Plpro) in Complex with Inhibitor Lithocholic Acid To Be Published.