Sodium in PDB 8s4j: Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.

The structure of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae., PDB code: 8s4j was solved by C.Mulligan, A.Daab, J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.64 / 1.70
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	126.66, 126.66, 180.28, 90, 90, 120
R / Rfree (%)	19 / 21.4

The binding sites of Sodium atom in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. (pdb code 8s4j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae., PDB code: 8s4j:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:20.9 occ:1.00 O A:VAL232 2.3 21.9 1.0 O A:ASN235 2.3 23.5 1.0 O A:TYR238 2.3 21.6 1.0 O A:HOH700 2.3 28.8 1.0 O A:HOH678 2.4 31.2 1.0 C A:VAL232 3.4 21.3 1.0 C A:TYR238 3.5 21.6 1.0 C A:ASN235 3.5 25.1 1.0 CG1 A:VAL232 3.9 21.9 1.0 CA A:VAL232 3.9 21.0 1.0 O A:HOH742 4.0 43.9 1.0 CA A:PRO236 4.1 22.9 1.0 N A:TYR238 4.2 20.3 1.0 C A:PRO236 4.3 23.7 1.0 N A:PRO236 4.3 21.4 1.0 CA A:TYR238 4.3 21.1 1.0 N A:ASN235 4.4 21.0 1.0 O A:PRO236 4.4 28.9 1.0 N A:ALA239 4.4 18.6 1.0 O A:HOH585 4.5 24.2 1.0 N A:ALA233 4.5 21.7 1.0 CA A:ASN235 4.5 22.7 1.0 CB A:VAL232 4.5 18.9 1.0 CA A:ALA239 4.6 18.2 1.0 CB A:TYR238 4.7 19.5 1.0 N A:TYR237 4.8 23.7 1.0 CA A:ALA233 4.8 20.6 1.0 C A:ALA233 4.8 21.3 1.0 O A:HOH615 4.9 45.9 1.0 O A:ILE231 4.9 22.0 1.0 O A:HOH606 4.9 27.3 1.0 O A:ALA233 5.0 22.1 1.0

Sodium binding site 2 out of 5 in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:32.7 occ:1.00 O A:HOH702 2.3 31.4 1.0 O A:HOH698 2.4 36.9 1.0 O A:ASN309 2.4 28.5 1.0 O A:THR306 2.4 26.0 1.0 O A:HOH717 2.4 39.9 1.0 O A:HOH716 2.5 33.5 1.0 C A:ASN309 3.4 24.5 1.0 C A:THR306 3.5 22.0 1.0 N A:ASN309 3.9 22.6 1.0 CA A:THR306 4.1 25.5 1.0 CA A:ASN309 4.1 20.8 1.0 O A:HOH753 4.2 44.2 1.0 CB A:THR306 4.3 28.5 1.0 CB A:ASN309 4.4 20.8 1.0 N A:SER310 4.5 21.7 1.0 N A:ALA307 4.5 23.7 1.0 N A:GLY308 4.6 25.2 1.0 O A:HOH618 4.7 29.6 1.0 O A:HOH751 4.7 56.8 1.0 CA A:ALA307 4.7 23.8 1.0 CA A:SER310 4.7 24.0 1.0 C A:ALA307 4.8 26.2 1.0 O A:HOH573 4.9 36.7 1.0 C A:GLY308 4.9 24.8 1.0

Sodium binding site 3 out of 5 in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:49.1 occ:1.00 OE1 A:GLU106 2.3 37.0 1.0 O A:HOH614 2.5 30.5 1.0 O A:HOH688 3.1 41.6 1.0 O A:HOH703 3.2 28.6 1.0 CB A:GLU106 3.3 19.5 1.0 CD A:GLU106 3.4 36.2 1.0 CA A:GLU106 3.7 21.1 1.0 CG A:GLU106 3.9 24.6 1.0 O A:HOH562 4.0 36.6 1.0 CA A:ALA159 4.1 20.5 1.0 CB A:GLN162 4.2 24.3 1.0 CB A:ALA159 4.3 17.7 1.0 CG A:GLN162 4.3 33.1 1.0 N A:GLU106 4.4 21.6 1.0 OE2 A:GLU106 4.5 37.0 1.0 O A:ALA159 4.5 22.2 1.0 C A:ALA159 4.8 21.6 1.0 C A:GLU106 5.0 25.2 1.0

Sodium binding site 4 out of 5 in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:68.1 occ:1.00 O A:HOH713 3.2 49.5 1.0 OD1 A:ASN298 3.5 31.6 1.0 CG A:ASN298 4.7 36.6 1.0

Sodium binding site 5 out of 5 in the Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:48.2 occ:1.00 O A:HOH574 2.3 48.7 1.0 O A:HOH690 2.4 53.3 1.0 O A:HOH587 2.5 38.5 1.0 O A:HOH567 2.6 40.0 1.0 OG1 A:THR290 3.6 33.2 1.0 O A:HOH560 4.3 38.0 1.0 OD2 A:ASP287 4.4 50.4 1.0 CB A:THR290 4.7 30.2 1.0 O A:ALA297 4.9 33.6 1.0 O A:HOH713 5.0 49.5 1.0

C.Mulligan, A.Daab, J.Davies. Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae. To Be Published.