Sodium in PDB 8ryf: Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22)

The structure of Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22), PDB code: 8ryf was solved by T.J.Klaubert, J.Gellner, C.Bernard, J.Effert, C.Lombard, V.R.I.Kaila, H.B.Bode, Y.Li, M.Groll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.95
Space group	P 42 2 2
Cell size a, b, c (Å), α, β, γ (°)	122.21, 122.21, 87.06, 90, 90, 90
R / Rfree (%)	14.6 / 19.7

The binding sites of Sodium atom in the Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22) (pdb code 8ryf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22), PDB code: 8ryf:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na305 b:32.3 occ:1.00 O A:SER160 2.7 24.9 1.0 O A:LEU132 2.8 23.1 1.0 N A:LEU137 3.0 25.1 1.0 N A:LEU136 3.4 24.2 1.0 CB A:LEU137 3.5 27.1 1.0 C A:LEU132 3.5 22.7 1.0 C A:SER160 3.6 23.7 1.0 N A:SER160 3.6 24.2 1.0 CB A:LEU132 3.7 22.9 1.0 C A:ASN135 3.8 23.6 1.0 CA A:LEU137 3.9 26.6 1.0 CG1 A:VAL159 3.9 25.1 1.0 CA A:ASN135 4.0 23.7 1.0 C A:LEU136 4.0 24.4 1.0 CA A:LEU136 4.0 25.3 1.0 CG1 A:VAL161 4.0 26.0 1.0 N A:ASN135 4.0 22.9 1.0 CB A:LEU136 4.0 25.2 1.0 O A:PRO133 4.1 23.9 1.0 CA A:LEU132 4.2 22.9 1.0 CA A:SER160 4.2 24.6 1.0 N A:PRO133 4.3 23.6 1.0 C A:PRO133 4.3 23.2 1.0 C A:VAL159 4.4 24.6 1.0 CA A:VAL159 4.4 23.6 1.0 N A:VAL161 4.6 23.8 1.0 O A:ASN135 4.6 25.0 1.0 CA A:PRO133 4.7 24.0 1.0 CB A:VAL159 4.8 23.8 1.0 CB A:SER160 4.8 24.3 1.0 CA A:VAL161 4.9 24.3 1.0 CG A:LEU137 4.9 28.1 1.0 N A:PHE134 4.9 22.9 1.0 CG A:LEU132 4.9 25.4 1.0 N A:GLY138 4.9 24.5 1.0 CD2 A:LEU132 4.9 26.5 1.0 C A:LEU137 5.0 27.0 1.0

Sodium binding site 2 out of 2 in the Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na305 b:52.6 occ:1.00 OE2 B:GLU72 2.5 40.0 1.0 OE2 B:GLU101 2.7 42.5 1.0 NE B:ARG97 2.9 35.7 1.0 NH2 B:ARG97 3.3 33.7 1.0 CD B:GLU101 3.5 38.7 1.0 CZ B:ARG97 3.5 34.5 1.0 CD B:GLU72 3.5 34.6 1.0 CB A:ASN228 3.6 25.9 1.0 CG B:GLU101 3.8 35.8 1.0 CD B:ARG97 3.9 36.5 1.0 CG B:ARG97 4.0 33.2 1.0 CG A:ASN228 4.1 26.7 1.0 OE1 B:GLU72 4.2 39.0 1.0 ND2 A:ASN228 4.2 28.5 1.0 NE B:ARG75 4.3 36.8 1.0 CB A:PRO39 4.3 27.2 1.0 CG B:GLU72 4.4 32.8 1.0 OE1 B:GLU101 4.5 38.0 1.0 N A:LEU229 4.6 29.2 1.0 CD B:ARG75 4.7 35.5 1.0 CA A:ASN228 4.7 27.1 1.0 CD2 B:LEU71 4.8 27.6 1.0 NH1 B:ARG97 4.8 35.3 1.0 CG A:PRO39 4.9 27.1 1.0 CE2 A:PHE230 4.9 29.9 1.0 OD1 A:ASN228 4.9 27.7 1.0

T.J.Klaubert, J.Gellner, C.Bernard, J.Effert, C.Lombard, V.R.I.Kaila, H.B.Bode, Y.Li, M.Groll. Molecular Basis For Azetidine-2-Carboxylic Acid Biosynthesis To Be Published.