Sodium in PDB 8rop: Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A

The structure of Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A, PDB code: 8rop was solved by L.D.Murdolo, J.C.Maddumage, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.08 / 1.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.763, 81.269, 109.89, 90, 90, 90
R / Rfree (%)	15.3 / 16.8

The structure of Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A (pdb code 8rop). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A, PDB code: 8rop:

Sodium binding site 1 out of 1 in the Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:26.6 occ:1.00 CE B:MET100 2.6 36.7 1.0 O B:LYS95 2.7 17.1 1.0 O B:HOH371 2.8 15.6 1.0 CG1 B:VAL10 3.7 13.7 0.4 CG1 B:VAL94 3.9 17.5 1.0 C B:LYS95 3.9 15.7 1.0 N B:ASP97 4.0 16.2 1.0 O B:VAL10 4.1 12.7 0.4 O B:VAL10 4.1 13.5 0.6 CB B:ASP97 4.1 20.1 1.0 SD B:MET100 4.3 33.8 1.0 CA B:TRP96 4.5 14.8 1.0 CB B:MET100 4.5 25.0 1.0 O B:HOH338 4.5 17.6 1.0 C B:TRP96 4.6 15.3 1.0 CB B:VAL10 4.6 13.1 0.6 N B:TRP96 4.7 14.4 1.0 CA B:ASP97 4.7 18.0 1.0 O B:ASP97 4.9 17.6 1.0 N B:VAL10 4.9 11.1 0.6 N B:VAL10 4.9 11.8 0.4 N B:LYS95 4.9 16.0 1.0 CG B:MET100 5.0 29.2 1.0

L.D.Murdolo, J.C.Maddumage, S.Gras. Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A To Be Published.