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Sodium in PDB 8qev: Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate

Enzymatic activity of Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate

All present enzymatic activity of Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate:
2.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate, PDB code: 8qev was solved by M.Nielipinski, A.Pietrzyk-Brzezinska, B.Sekula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.67 / 1.55
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.247, 154.601, 191.768, 90, 90, 90
R / Rfree (%) 18.4 / 21.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate (pdb code 8qev). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate, PDB code: 8qev:

Sodium binding site 1 out of 1 in 8qev

Go back to Sodium Binding Sites List in 8qev
Sodium binding site 1 out of 1 in the Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na412

b:24.1
occ:1.00
 O A:HOH858 2.6 46.1 1.0
O A:HOH634 2.6 22.5 1.0
O A:ASP169 2.8 17.5 1.0
O A:HOH790 2.8 42.1 1.0
C A:ASP169 3.6 17.3 1.0
CA A:ASP169 3.8 17.4 1.0
CD2 A:LEU373 3.9 18.3 1.0
CG1 A:VAL190 3.9 17.5 1.0
CB A:ASP169 3.9 17.7 1.0
CD A:PRO191 4.0 17.7 1.0
CB A:VAL190 4.2 17.4 1.0
OD1 A:ASP169 4.3 18.0 1.0
O A:HOH890 4.3 50.7 1.0
O A:HOH814 4.3 30.0 1.0
CG A:ASP169 4.6 17.9 1.0
CA A:VAL190 4.7 17.6 1.0
O A:HOH586 4.9 36.6 1.0
N A:ILE170 4.9 17.1 1.0
O A:HOH683 5.0 42.6 1.0
CG A:PRO191 5.0 17.8 1.0

Reference:

M.Nielipinski, A.Pietrzyk-Brzezinska, A.Wlodawer, B.Sekula. Structural Analysis and Molecular Substrate Recognition Properties of Arabidopsis Thaliana Ornithine Transcarbamylase, the Molecular Target of Phaseolotoxin Produced By Pseudomonas Syringae Front Plant Sci 2023.
ISSN: ESSN 1664-462X
DOI: 10.3389/FPLS.2023.1297956
Page generated: Wed Oct 9 13:09:53 2024

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