Sodium in PDB 8i5g: Structure of Human NAV1.7 in Complex with Pf-05089771

The structure of Structure of Human NAV1.7 in Complex with Pf-05089771 also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Structure of Human NAV1.7 in Complex with Pf-05089771 (pdb code 8i5g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Human NAV1.7 in Complex with Pf-05089771, PDB code: 8i5g:

Sodium binding site 1 out of 1 in the Structure of Human NAV1.7 in Complex with Pf-05089771


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human NAV1.7 in Complex with Pf-05089771 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2006 b:29.0 occ:1.00 OE1 A:GLU930 2.3 39.2 1.0 OD1 A:ASP361 2.4 32.5 1.0 O A:HOH2105 2.9 30.0 1.0 CD A:GLU930 3.2 40.2 1.0 CG A:ASP361 3.3 32.5 1.0 CG A:GLU930 3.3 23.2 1.0 CB A:GLU927 3.4 39.1 1.0 OD2 A:ASP361 3.5 48.8 1.0 CG2 A:ILE929 3.6 19.0 1.0 CA A:GLU927 3.6 32.6 1.0 N A:GLU930 3.6 26.4 1.0 N A:TRP928 3.7 20.8 1.0 N A:ILE929 3.8 20.6 1.0 C A:GLU927 3.8 34.0 1.0 CB A:GLU930 3.9 20.1 1.0 CG A:GLU927 4.0 37.8 1.0 CB A:TYR362 4.2 19.4 1.0 OE1 A:GLU927 4.4 51.5 1.0 CA A:GLU930 4.4 12.3 1.0 OE2 A:GLU930 4.4 39.2 1.0 C A:TRP928 4.4 21.7 1.0 CA A:ILE929 4.5 20.3 1.0 CD A:GLU927 4.5 45.4 1.0 CB A:ILE929 4.5 22.0 1.0 C A:ILE929 4.5 15.7 1.0 O A:GLU927 4.6 44.2 1.0 CA A:TRP928 4.6 11.9 1.0 NH2 A:ARG922 4.7 47.7 1.0 N A:TYR362 4.7 26.4 1.0 CB A:ASP361 4.7 20.6 1.0 CG A:TYR362 4.8 16.6 1.0 C A:ASP361 4.9 30.1 1.0 N A:GLU927 5.0 32.0 1.0

Q.Wu, J.Huang, X.Fan, K.Wang, X.Jin, G.Huang, J.Li, X.Pan, N.Yan. Structural Mapping of Na V 1.7 Antagonists. Nat Commun V. 14 3224 2023.
ISSN: ESSN 2041-1723
PubMed: 37270609
DOI: 10.1038/S41467-023-38942-3