Atomistry » Sodium » PDB 8e75-8ezg » 8etz
Atomistry »
  Sodium »
    PDB 8e75-8ezg »
      8etz »

Sodium in PDB 8etz: Ancestral Petase 35_442 Mutant E13D

Protein crystallography data

The structure of Ancestral Petase 35_442 Mutant E13D, PDB code: 8etz was solved by J.W.Saunders, R.L.Frkic, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.71 / 1.68
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 69.533, 149.488, 55.634, 90, 90, 90
R / Rfree (%) 15.5 / 17.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Ancestral Petase 35_442 Mutant E13D (pdb code 8etz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ancestral Petase 35_442 Mutant E13D, PDB code: 8etz:

Sodium binding site 1 out of 1 in 8etz

Go back to Sodium Binding Sites List in 8etz
Sodium binding site 1 out of 1 in the Ancestral Petase 35_442 Mutant E13D


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ancestral Petase 35_442 Mutant E13D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na311

b:22.7
occ:1.00
O A:ILE252 2.3 22.1 1.0
O A:HIS247 2.3 24.6 1.0
O A:HOH606 2.4 30.7 1.0
O A:HOH610 2.4 28.6 1.0
O A:HOH573 2.4 26.1 1.0
O A:ASP249 2.4 24.7 1.0
HA A:SER250 3.3 35.1 1.0
C A:HIS247 3.4 23.6 1.0
C A:ILE252 3.4 25.1 1.0
C A:ASP249 3.4 24.3 1.0
H A:ILE252 3.5 26.2 1.0
HA A:SER253 3.6 25.8 1.0
HA A:HIS247 3.7 26.9 1.0
HB2 A:HIS247 3.8 29.8 1.0
CA A:SER250 4.0 29.2 1.0
CA A:HIS247 4.0 22.4 1.0
HB A:ILE252 4.1 26.5 1.0
N A:ILE252 4.1 21.8 1.0
N A:SER250 4.1 28.4 1.0
C A:ASP248 4.2 27.6 1.0
C A:SER250 4.2 25.0 1.0
N A:ASP249 4.2 26.1 1.0
CA A:ILE252 4.3 21.2 1.0
N A:SER253 4.3 21.4 1.0
O A:HOH613 4.3 48.0 1.0
CA A:SER253 4.3 21.5 1.0
O A:SER250 4.4 29.0 1.0
N A:ASP248 4.4 26.5 1.0
HA A:ASP248 4.4 30.3 1.0
CB A:HIS247 4.4 24.8 1.0
CA A:ASP249 4.5 26.4 1.0
H A:ASP249 4.5 31.2 1.0
O A:ASP248 4.5 29.8 1.0
CA A:ASP248 4.6 25.2 1.0
CB A:ILE252 4.7 22.1 1.0
HG22 A:ILE252 4.8 27.8 1.0
C A:SER253 4.9 23.6 1.0
N A:ALA251 4.9 25.6 1.0
HB3 A:ASP249 4.9 35.4 1.0
H A:SER250 4.9 34.0 1.0

Reference:

J.Saunders, R.L.Frkic, C.J.Jackson. Ancestral Petase 35_442 Mutant E13D To Be Published.
Page generated: Wed Oct 9 11:43:20 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy