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Sodium in PDB 8ety: Ancestral Petase 35_442

Protein crystallography data

The structure of Ancestral Petase 35_442, PDB code: 8ety was solved by J.W.Saunders, R.L.Frkic, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.37 / 1.54
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 69.759, 148.498, 55.554, 90, 90, 90
R / Rfree (%) 16.9 / 19.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Ancestral Petase 35_442 (pdb code 8ety). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ancestral Petase 35_442, PDB code: 8ety:

Sodium binding site 1 out of 1 in 8ety

Go back to Sodium Binding Sites List in 8ety
Sodium binding site 1 out of 1 in the Ancestral Petase 35_442


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ancestral Petase 35_442 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:32.1
occ:1.00
O A:ALA36 2.2 45.0 1.0
O A:PHE39 2.3 29.1 1.0
O A:ARG33 2.5 33.3 1.0
O A:HOH605 2.5 49.0 1.0
O A:HOH574 2.7 38.9 1.0
O A:HOH618 2.8 41.9 1.0
C A:ALA36 3.4 41.2 1.0
C A:PHE39 3.5 26.0 1.0
C A:ARG33 3.6 29.8 1.0
CB A:ALA36 4.0 24.0 1.0
N A:PHE39 4.1 24.3 1.0
CA A:ALA36 4.1 29.7 1.0
O A:HOH665 4.2 57.1 1.0
OD1 A:ASN91 4.3 36.2 1.0
N A:ALA36 4.3 32.3 1.0
CG A:ARG33 4.3 35.1 1.0
CA A:GLY40 4.4 22.4 1.0
N A:GLY38 4.4 33.0 1.0
CA A:ARG33 4.4 29.5 1.0
N A:GLY40 4.4 24.9 1.0
CA A:PHE39 4.4 28.2 1.0
N A:SER37 4.5 35.1 1.0
O A:LEU34 4.6 54.8 1.0
N A:LEU34 4.6 32.9 1.0
CA A:SER37 4.7 35.7 1.0
C A:LEU34 4.8 43.9 1.0
CA A:LEU34 4.8 41.0 1.0
C A:GLY40 4.9 23.4 1.0
C A:SER37 4.9 31.5 1.0
N A:GLY41 4.9 23.7 1.0
CB A:ARG33 5.0 31.1 1.0

Reference:

J.Saunders, R.L.Frkic, C.J.Jackson. Ancestral Petase 35_442 To Be Published.
Page generated: Thu Dec 28 11:36:33 2023

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