Sodium in PDB 8dt6: Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis

The structure of Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis, PDB code: 8dt6 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.26 / 2.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	92.41, 88.01, 100.24, 90, 95.75, 90
R / Rfree (%)	17.6 / 21.8

The structure of Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis also contains other interesting chemical elements:

Calcium	(Ca)	9 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis (pdb code 8dt6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis, PDB code: 8dt6:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:44.6 occ:1.00 O B:ARG66 2.4 50.9 1.0 OE1 B:GLU90 2.9 64.6 1.0 OE2 B:GLU90 3.0 65.2 1.0 CD B:GLU90 3.3 68.3 1.0 C B:ARG66 3.5 46.9 1.0 N B:ARG66 3.6 58.4 1.0 CA B:ARG66 4.0 49.8 1.0 CB B:ARG66 4.4 56.1 1.0 N B:MET67 4.6 50.7 1.0 C B:GLY65 4.7 53.2 1.0 CA B:GLY65 4.8 56.2 1.0 CG B:GLU90 4.9 62.9 1.0 CA B:MET67 5.0 49.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis within 5.0Å range: probe atom residue distance (Å) B Occ D:Na404 b:43.7 occ:1.00 OE2 D:GLU90 2.3 70.2 1.0 O D:ARG66 2.4 59.6 1.0 O D:HOH618 2.7 71.0 1.0 CD D:GLU90 3.1 68.6 1.0 OE1 D:GLU90 3.3 72.5 1.0 C D:ARG66 3.5 55.3 1.0 N D:ARG66 3.8 60.0 1.0 CA D:ARG66 4.1 60.4 1.0 CB D:ARG66 4.4 57.4 1.0 CG D:GLU90 4.6 68.3 1.0 N D:MET67 4.7 53.2 1.0 C D:GLY65 5.0 57.8 1.0

N.D.Debouver, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis To Be Published.