Sodium in PDB 8dmr: Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose

The structure of Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose, PDB code: 8dmr was solved by Z.Zhang, C.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.21 / 1.86
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	95.557, 95.557, 54.046, 90, 90, 90
R / Rfree (%)	15.1 / 18

The binding sites of Sodium atom in the Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose (pdb code 8dmr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose, PDB code: 8dmr:

Sodium binding site 1 out of 1 in the Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na505 b:62.1 occ:1.00 HD2 A:HIS245 2.4 37.9 1.0 O A:HOH696 3.1 45.1 1.0 CD2 A:HIS245 3.2 31.5 1.0 HB2 A:HIS245 3.6 39.9 1.0 O A:HOH824 3.7 40.5 1.0 CG A:HIS245 4.0 34.2 1.0 NE2 A:HIS245 4.1 41.9 1.0 HD21 A:ASN190 4.2 45.1 1.0 CB A:HIS245 4.2 33.2 1.0 HE2 A:HIS245 4.3 50.4 1.0 HD22 A:ASN190 4.3 45.1 1.0 O A:HOH778 4.4 38.4 1.0 HA A:HIS245 4.5 36.3 1.0 O A:HOH717 4.5 36.0 1.0 ND2 A:ASN190 4.6 37.6 1.0 CA A:HIS245 4.9 30.3 1.0 OE2 A:GLU248 5.0 39.8 0.5

Z.Zhang, C.Das. Structure of Adp-Ribose-Bound Legionella Pneumophila Macrodomain Effector Mavl R370A To Be Published.