Sodium in PDB 8dl1: BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose

The structure of BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose, PDB code: 8dl1 was solved by H.A.Brown, A.L.Deveaux, N.M.Koropatkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.93 / 2.09
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	99.68, 128.64, 149.76, 90, 105.37, 90
R / Rfree (%)	17.7 / 22.3

The structure of BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose also contains other interesting chemical elements:

Manganese	(Mn)	4 atoms
Calcium	(Ca)	4 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose (pdb code 8dl1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose, PDB code: 8dl1:

Sodium binding site 1 out of 1 in the BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose within 5.0Å range: probe atom residue distance (Å) B Occ C:Na2310 b:49.7 occ:1.00 O C:HOH2595 2.7 33.0 1.0 O C:HOH2798 2.8 33.6 1.0 OD1 C:ASN311 2.9 33.5 1.0 OD1 C:ASN314 3.0 26.9 1.0 O C:HOH2511 3.1 25.9 1.0 OE1 C:GLU313 3.2 32.8 1.0 CA C:ASN311 3.5 25.3 1.0 CG C:ASN311 3.8 28.2 1.0 CG C:ASN314 3.8 26.1 1.0 CB C:ASN311 3.8 26.1 1.0 CB C:SER673 3.9 43.4 1.0 ND2 C:ASN314 3.9 24.9 1.0 C C:ASN311 4.2 23.9 1.0 CD C:GLU313 4.3 34.5 1.0 N C:ASN311 4.5 24.9 1.0 OG C:SER673 4.7 48.1 1.0 CB C:GLU313 4.7 30.8 1.0 O C:ASN311 4.7 22.0 1.0 N C:LYS312 4.7 25.1 1.0 N C:GLU313 4.8 27.5 1.0 O C:HOH2565 4.9 41.1 1.0 CG C:GLU313 5.0 31.9 1.0 CA C:SER673 5.0 43.3 1.0

H.A.Brown, A.L.Deveaux, N.M.Koropatkin. BOGH13ASUS-E523Q From Bacteroides Ovatus To Be Published.