Atomistry » Sodium » PDB 8cps-8cwe » 8ctc
Atomistry »
  Sodium »
    PDB 8cps-8cwe »
      8ctc »

Sodium in PDB 8ctc: Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State

Other elements in 8ctc:

The structure of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State also contains other interesting chemical elements:

Mercury (Hg) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State (pdb code 8ctc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 9 binding sites of Sodium where determined in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State, PDB code: 8ctc:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Sodium binding site 1 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 1 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na601

b:58.8
occ:1.00
 O A:ASN366 2.6 60.7 1.0
OD2 A:ASP455 2.6 60.7 1.0
O A:GLY362 2.9 57.1 1.0
O A:ALA363 3.3 56.6 1.0
C A:ALA363 3.4 55.6 1.0
O A:ASN451 3.4 61.2 1.0
CA A:ALA363 3.5 56.1 1.0
CG A:ASP455 3.6 61.2 1.0
C A:ASN366 3.7 58.6 1.0
C A:GLY362 3.9 56.6 1.0
CG A:MET367 3.9 54.9 1.0
C A:ASN451 4.0 58.8 1.0
OD1 A:ASP455 4.0 62.1 1.0
CB A:ASN451 4.1 56.1 1.0
OG A:SER333 4.1 57.2 1.0
N A:THR364 4.1 54.7 1.0
N A:ALA363 4.2 56.4 1.0
CB A:SER333 4.3 56.9 1.0
CA A:ASN451 4.5 56.5 1.0
CE A:MET367 4.6 55.5 1.0
N A:MET367 4.6 57.9 1.0
CA A:ASN366 4.6 57.8 1.0
CA A:MET367 4.6 57.7 1.0
N A:ASN366 4.7 54.9 1.0
CA A:THR364 4.7 55.4 1.0
CB A:ALA363 4.7 58.3 1.0
CB A:ASN366 4.8 61.1 1.0
N A:VAL452 4.8 58.7 1.0
CB A:ASP455 4.9 62.8 1.0
CB A:MET367 4.9 55.4 1.0
CG A:ASN451 4.9 56.8 1.0

Sodium binding site 2 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 2 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na602

b:58.3
occ:1.00
 O A:ALA408 2.1 56.9 1.0
O A:THR364 2.2 54.0 1.0
O A:SER405 2.2 59.0 1.0
O A:ILE406 2.7 55.7 1.0
C A:ILE406 3.0 56.1 1.0
N A:ALA408 3.1 56.5 1.0
C A:ALA408 3.1 56.0 1.0
C A:SER405 3.3 57.5 1.0
CA A:ILE406 3.4 55.0 1.0
SD A:MET367 3.4 54.1 1.0
C A:THR364 3.4 54.8 1.0
OG1 A:THR364 3.5 54.8 1.0
CA A:ALA408 3.6 56.8 1.0
N A:GLY407 3.7 57.7 1.0
N A:ILE406 3.8 57.0 1.0
C A:GLY407 4.0 55.3 1.0
CB A:ALA408 4.1 57.7 1.0
CE A:MET367 4.1 55.5 1.0
CA A:THR364 4.2 55.4 1.0
CA A:GLY407 4.3 55.8 1.0
N A:ALA409 4.3 55.5 1.0
CG A:MET367 4.4 54.9 1.0
N A:ILE365 4.4 55.1 1.0
CB A:THR364 4.5 55.4 1.0
CA A:ILE365 4.6 54.2 1.0
CA A:SER405 4.6 57.0 1.0
O A:ALA404 4.8 63.3 1.0
CA A:ALA409 4.8 55.7 1.0
CB A:ILE406 4.8 54.0 1.0
O A:ILE365 4.9 57.0 1.0
O A:GLY407 4.9 54.5 1.0
CB A:MET367 5.0 55.4 1.0
C A:ILE365 5.0 55.3 1.0

Sodium binding site 3 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 3 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na603

b:67.9
occ:1.00
 OG1 A:THR102 1.9 65.2 1.0
OD1 A:ASP368 2.3 63.9 1.0
OD1 A:ASN366 2.4 64.5 1.0
O A:TYR98 2.8 67.0 1.0
OG1 A:THR101 2.8 67.0 1.0
N A:THR102 3.2 64.7 1.0
CB A:THR102 3.2 63.2 1.0
CG A:ASN366 3.4 62.9 1.0
CA A:THR102 3.5 62.4 1.0
CG A:ASP368 3.6 63.5 1.0
C A:TYR98 3.7 67.7 1.0
C A:THR101 3.9 65.1 1.0
CA A:TYR98 4.0 67.2 1.0
CB A:THR101 4.0 65.0 1.0
CA A:ASN366 4.2 57.8 1.0
ND2 A:ASN366 4.2 63.9 1.0
N A:MET367 4.3 57.9 1.0
CG2 A:THR102 4.3 62.0 1.0
OD2 A:ASP368 4.3 66.3 1.0
CB A:ASN366 4.3 61.1 1.0
CA A:THR101 4.4 64.6 1.0
N A:ASP368 4.5 58.9 1.0
C A:ASN366 4.5 58.6 1.0
CB A:ASP368 4.6 61.0 1.0
CB A:TYR98 4.6 66.4 1.0
CA A:ASP368 4.6 59.5 1.0
O A:THR101 4.7 65.4 1.0
C A:MET367 4.7 59.2 1.0
N A:THR101 4.8 64.8 1.0
O A:TYR97 4.9 68.2 1.0
N A:PHE99 4.9 68.4 1.0

Sodium binding site 4 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 4 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na601

b:58.8
occ:1.00
 O B:ASN366 2.6 60.7 1.0
OD2 B:ASP455 2.6 60.7 1.0
O B:GLY362 2.9 57.1 1.0
O B:ALA363 3.2 56.6 1.0
C B:ALA363 3.4 55.6 1.0
O B:ASN451 3.4 61.2 1.0
CA B:ALA363 3.5 56.1 1.0
CG B:ASP455 3.6 61.2 1.0
C B:ASN366 3.7 58.6 1.0
C B:GLY362 3.9 56.6 1.0
CG B:MET367 3.9 54.9 1.0
C B:ASN451 4.0 58.8 1.0
OD1 B:ASP455 4.0 62.1 1.0
CB B:ASN451 4.1 56.1 1.0
OG B:SER333 4.1 57.2 1.0
N B:THR364 4.1 54.7 1.0
N B:ALA363 4.2 56.4 1.0
CB B:SER333 4.3 56.9 1.0
CA B:ASN451 4.5 56.5 1.0
CE B:MET367 4.6 55.5 1.0
N B:MET367 4.6 57.9 1.0
CA B:ASN366 4.6 57.8 1.0
CA B:MET367 4.6 57.7 1.0
N B:ASN366 4.7 54.9 1.0
CA B:THR364 4.7 55.4 1.0
CB B:ALA363 4.7 58.3 1.0
CB B:ASN366 4.8 61.1 1.0
N B:VAL452 4.8 58.7 1.0
CB B:ASP455 4.9 62.8 1.0
CB B:MET367 4.9 55.4 1.0
CG B:ASN451 4.9 56.8 1.0

Sodium binding site 5 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 5 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na602

b:58.3
occ:1.00
 O B:ALA408 2.1 56.9 1.0
O B:THR364 2.2 54.0 1.0
O B:SER405 2.2 59.0 1.0
O B:ILE406 2.7 55.7 1.0
C B:ILE406 3.0 56.1 1.0
N B:ALA408 3.1 56.5 1.0
C B:ALA408 3.1 56.0 1.0
C B:SER405 3.3 57.5 1.0
CA B:ILE406 3.4 55.0 1.0
SD B:MET367 3.4 54.1 1.0
C B:THR364 3.4 54.8 1.0
OG1 B:THR364 3.5 54.8 1.0
CA B:ALA408 3.6 56.8 1.0
N B:GLY407 3.7 57.7 1.0
N B:ILE406 3.8 57.0 1.0
C B:GLY407 4.0 55.3 1.0
CB B:ALA408 4.1 57.7 1.0
CE B:MET367 4.1 55.5 1.0
CA B:THR364 4.2 55.4 1.0
CA B:GLY407 4.3 55.8 1.0
N B:ALA409 4.3 55.5 1.0
CG B:MET367 4.4 54.9 1.0
N B:ILE365 4.4 55.1 1.0
CB B:THR364 4.5 55.4 1.0
CA B:ILE365 4.6 54.2 1.0
CA B:SER405 4.6 57.0 1.0
O B:ALA404 4.8 63.3 1.0
CA B:ALA409 4.8 55.7 1.0
CB B:ILE406 4.8 54.0 1.0
O B:ILE365 4.9 57.0 1.0
O B:GLY407 4.9 54.5 1.0
CB B:MET367 5.0 55.4 1.0
C B:ILE365 5.0 55.3 1.0

Sodium binding site 6 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 6 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na603

b:67.9
occ:1.00
 OG1 B:THR102 1.9 65.2 1.0
OD1 B:ASP368 2.3 63.9 1.0
OD1 B:ASN366 2.4 64.5 1.0
O B:TYR98 2.8 67.0 1.0
OG1 B:THR101 2.8 67.0 1.0
N B:THR102 3.2 64.7 1.0
CB B:THR102 3.2 63.2 1.0
CG B:ASN366 3.4 62.9 1.0
CA B:THR102 3.5 62.4 1.0
CG B:ASP368 3.6 63.5 1.0
C B:TYR98 3.7 67.7 1.0
C B:THR101 3.9 65.1 1.0
CA B:TYR98 4.0 67.2 1.0
CB B:THR101 4.0 65.0 1.0
CA B:ASN366 4.2 57.8 1.0
ND2 B:ASN366 4.2 63.9 1.0
N B:MET367 4.3 57.9 1.0
CG2 B:THR102 4.3 62.0 1.0
OD2 B:ASP368 4.3 66.3 1.0
CB B:ASN366 4.3 61.1 1.0
CA B:THR101 4.4 64.6 1.0
C B:ASN366 4.5 58.6 1.0
N B:ASP368 4.5 58.9 1.0
CB B:ASP368 4.6 61.0 1.0
CB B:TYR98 4.6 66.4 1.0
CA B:ASP368 4.6 59.5 1.0
O B:THR101 4.7 65.4 1.0
C B:MET367 4.7 59.2 1.0
N B:THR101 4.8 64.8 1.0
O B:TYR97 4.9 68.2 1.0
N B:PHE99 4.9 68.4 1.0

Sodium binding site 7 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 7 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na601

b:58.8
occ:1.00
 O C:ASN366 2.6 60.7 1.0
OD2 C:ASP455 2.6 60.7 1.0
O C:GLY362 2.9 57.1 1.0
O C:ALA363 3.2 56.6 1.0
C C:ALA363 3.4 55.6 1.0
O C:ASN451 3.4 61.2 1.0
CA C:ALA363 3.5 56.1 1.0
CG C:ASP455 3.6 61.2 1.0
C C:ASN366 3.7 58.6 1.0
C C:GLY362 3.9 56.6 1.0
CG C:MET367 3.9 54.9 1.0
C C:ASN451 4.0 58.8 1.0
OD1 C:ASP455 4.0 62.1 1.0
CB C:ASN451 4.1 56.1 1.0
OG C:SER333 4.1 57.2 1.0
N C:THR364 4.1 54.7 1.0
N C:ALA363 4.2 56.4 1.0
CB C:SER333 4.3 56.9 1.0
CA C:ASN451 4.5 56.5 1.0
CE C:MET367 4.6 55.5 1.0
N C:MET367 4.6 57.9 1.0
CA C:ASN366 4.6 57.8 1.0
CA C:MET367 4.6 57.7 1.0
N C:ASN366 4.7 54.9 1.0
CA C:THR364 4.7 55.4 1.0
CB C:ALA363 4.7 58.3 1.0
CB C:ASN366 4.8 61.1 1.0
N C:VAL452 4.8 58.7 1.0
CB C:ASP455 4.9 62.8 1.0
CB C:MET367 4.9 55.4 1.0
CG C:ASN451 4.9 56.8 1.0

Sodium binding site 8 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 8 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na602

b:58.3
occ:1.00
 O C:ALA408 2.1 56.9 1.0
O C:THR364 2.2 54.0 1.0
O C:SER405 2.2 59.0 1.0
O C:ILE406 2.7 55.7 1.0
C C:ILE406 3.0 56.1 1.0
N C:ALA408 3.1 56.5 1.0
C C:ALA408 3.1 56.0 1.0
C C:SER405 3.3 57.5 1.0
CA C:ILE406 3.4 55.0 1.0
SD C:MET367 3.4 54.1 1.0
C C:THR364 3.4 54.8 1.0
OG1 C:THR364 3.5 54.8 1.0
CA C:ALA408 3.6 56.8 1.0
N C:GLY407 3.7 57.7 1.0
N C:ILE406 3.8 57.0 1.0
C C:GLY407 4.0 55.3 1.0
CB C:ALA408 4.1 57.7 1.0
CE C:MET367 4.1 55.5 1.0
CA C:THR364 4.2 55.4 1.0
CA C:GLY407 4.3 55.8 1.0
N C:ALA409 4.3 55.5 1.0
CG C:MET367 4.4 54.9 1.0
N C:ILE365 4.4 55.1 1.0
CB C:THR364 4.5 55.4 1.0
CA C:ILE365 4.6 54.2 1.0
CA C:SER405 4.6 57.0 1.0
O C:ALA404 4.8 63.3 1.0
CA C:ALA409 4.8 55.7 1.0
CB C:ILE406 4.8 54.0 1.0
O C:ILE365 4.9 57.0 1.0
O C:GLY407 4.9 54.5 1.0
CB C:MET367 5.0 55.4 1.0
C C:ILE365 5.0 55.3 1.0

Sodium binding site 9 out of 9 in 8ctc

Go back to Sodium Binding Sites List in 8ctc
Sodium binding site 9 out of 9 in the Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound Glutamate in An Intermediate Outward Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na603

b:67.9
occ:1.00
 OG1 C:THR102 1.9 65.2 1.0
OD1 C:ASP368 2.3 63.9 1.0
OD1 C:ASN366 2.4 64.5 1.0
O C:TYR98 2.8 67.0 1.0
OG1 C:THR101 2.8 67.0 1.0
N C:THR102 3.2 64.7 1.0
CB C:THR102 3.2 63.2 1.0
CG C:ASN366 3.4 62.9 1.0
CA C:THR102 3.5 62.4 1.0
CG C:ASP368 3.6 63.5 1.0
C C:TYR98 3.7 67.7 1.0
C C:THR101 3.9 65.1 1.0
CA C:TYR98 4.0 67.2 1.0
CB C:THR101 4.0 65.0 1.0
CA C:ASN366 4.2 57.8 1.0
ND2 C:ASN366 4.2 63.9 1.0
N C:MET367 4.3 57.9 1.0
CG2 C:THR102 4.3 62.0 1.0
OD2 C:ASP368 4.3 66.3 1.0
CB C:ASN366 4.3 61.1 1.0
CA C:THR101 4.4 64.6 1.0
N C:ASP368 4.5 58.9 1.0
C C:ASN366 4.5 58.6 1.0
CB C:ASP368 4.6 61.0 1.0
CB C:TYR98 4.6 66.4 1.0
CA C:ASP368 4.6 59.5 1.0
O C:THR101 4.7 65.4 1.0
C C:MET367 4.7 59.2 1.0
N C:THR101 4.8 64.8 1.0
O C:TYR97 4.9 68.2 1.0
N C:PHE99 4.9 68.4 1.0

Reference:

B.Qiu, O.Boudker. Symport and Antiport Mechanisms of Human Glutamate Transporters Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-38120-5
Page generated: Wed Oct 9 11:06:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy