Sodium in PDB 8ck2: MUC2 CYSD1 G1352S

The structure of MUC2 CYSD1 G1352S, PDB code: 8ck2 was solved by L.Khmelnitsky, D.Fass, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.66 / 1.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	55.008, 58.962, 27.659, 90, 90, 90
R / Rfree (%)	18.6 / 21.5

The structure of MUC2 CYSD1 G1352S also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Sodium atom in the MUC2 CYSD1 G1352S (pdb code 8ck2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the MUC2 CYSD1 G1352S, PDB code: 8ck2:

Sodium binding site 1 out of 1 in the MUC2 CYSD1 G1352S


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of MUC2 CYSD1 G1352S within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1402 b:24.9 occ:1.00 O A:LYS1354 2.7 19.4 1.0 O A:HOH1536 2.8 24.6 1.0 OD2 A:ASP1369 2.8 19.9 1.0 N A:LYS1366 2.8 16.0 1.0 CB A:ASP1369 3.5 19.4 1.0 CG A:ASP1369 3.5 24.1 1.0 CA A:CYS1365 3.6 16.1 1.0 NE2 A:GLN1370 3.6 16.3 1.0 C A:CYS1365 3.7 18.1 1.0 C A:LYS1354 3.7 21.0 1.0 O A:LYS1366 3.8 17.5 1.0 CA A:LYS1366 3.8 14.6 0.3 CA A:LYS1366 3.8 14.5 0.7 CB A:LYS1366 3.8 18.8 0.3 CB A:LYS1366 3.8 18.8 0.7 CG A:LYS1366 4.0 18.3 0.7 CG A:LYS1366 4.1 18.3 0.3 CA A:VAL1355 4.2 20.5 1.0 O A:ILE1364 4.2 18.8 1.0 C A:LYS1366 4.2 17.2 1.0 O A:HOH1581 4.3 36.8 1.0 NZ A:LYS1366 4.3 23.3 0.7 N A:VAL1355 4.3 16.8 1.0 SG A:CYS1365 4.3 18.5 1.0 O A:HOH1561 4.5 38.6 1.0 CB A:CYS1365 4.5 14.8 1.0 O A:HOH1518 4.5 32.5 1.0 N A:CYS1365 4.6 15.3 1.0 CG A:LYS1354 4.7 34.1 1.0 C A:ILE1364 4.7 18.6 1.0 OD1 A:ASP1369 4.7 22.6 1.0 CB A:LYS1354 4.8 21.1 1.0 CE A:LYS1366 4.8 23.9 0.3 O A:CYS1365 4.9 17.1 1.0 CA A:LYS1354 4.9 17.4 1.0 CD A:GLN1370 4.9 20.6 1.0 C A:VAL1355 4.9 21.7 1.0 CA A:ASP1369 5.0 19.2 1.0

L.Khmelnitsky, G.Javitt, N.Reznik, N.Yeshaya, N.Elad, Y.Anikster, N.Shalva, O.Barel, B.Pode-Shakked, L.J.Greenberg, M.J.Segel, D.Fass. Pulmonary Fibrosis Mutation Undermines Mucin 5B Supramolecular Assembly To Be Published.