Sodium in PDB 8b6e: Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora

The structure of Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora, PDB code: 8b6e was solved by L.Macorano, V.Applegate, A.Hoeppner, S.H.J.Smits, E.C.M.Nowack, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.00 / 1.20
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	28.887, 30.943, 31.188, 83.99, 63.45, 69.84
R / Rfree (%)	13.1 / 17.6

The binding sites of Sodium atom in the Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora (pdb code 8b6e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora, PDB code: 8b6e:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora within 5.0Å range: probe atom residue distance (Å) B Occ B:Na108 b:46.8 occ:1.00 ND2 B:ASN34 3.2 22.9 1.0 NZ B:LYS37 3.6 30.7 0.6 OD1 B:ASN34 3.9 25.0 1.0 CG B:ASN34 4.0 17.3 1.0 CB B:PHE30 4.2 16.6 1.0 CG B:PHE30 4.2 18.4 1.0 CD1 B:PHE30 4.3 22.3 1.0 CG B:GLN33 4.4 21.1 1.0 CE B:LYS37 4.6 26.2 0.6 CD2 B:PHE30 4.7 20.9 1.0 NE2 B:GLN33 4.9 26.8 1.0 CE1 B:PHE30 4.9 25.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Dna-Binding Short Chromatophore-Targeted Protein Sctp-23166 From Paulinella Chromatophora within 5.0Å range: probe atom residue distance (Å) B Occ B:Na109 b:59.1 occ:1.00 CA B:GLN33 3.9 15.4 1.0 N B:GLN33 3.9 15.5 1.0 O B:HOH252 4.0 33.7 1.0 CB B:GLN33 4.3 18.7 1.0 C B:PRO32 4.3 15.2 1.0 CG B:PRO32 4.3 16.9 1.0 CB B:PRO32 4.4 16.1 1.0 CB B:TYR36 4.4 16.2 1.0 O B:PRO32 4.6 15.5 1.0 CG B:TYR36 4.6 16.1 1.0 NZ B:LYS37 4.8 33.0 0.4 CD1 B:LEU20 4.8 19.0 1.0 CD1 B:TYR36 4.9 22.0 1.0 CA B:PRO32 5.0 16.9 1.0 OE1 B:GLN33 5.0 19.6 1.0

L.Macorano, T.M.Binny, T.Spiegl, V.Klimenko, A.Singer, L.Oberleitner, V.Applegate, S.Seyffert, A.Stefanski, L.Gremer, C.G.W.Gertzen, A.Hoppner, S.H.J.Smits, E.C.M.Nowack. Dna-Binding and Protein Structure of Nuclear Factors Likely Acting in Genetic Information Processing in the Paulinella Chromatophore. Proc.Natl.Acad.Sci.Usa V. 120 95120 2023.
ISSN: ESSN 1091-6490
PubMed: 37364116
DOI: 10.1073/PNAS.2221595120