Sodium in PDB 8b5e: Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq

The structure of Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq, PDB code: 8b5e was solved by J.Whittaker, A.Guskov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.66 / 1.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.67, 53.08, 54.08, 92.4, 92.37, 94.11
R / Rfree (%)	10 / 20

The binding sites of Sodium atom in the Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq (pdb code 8b5e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq, PDB code: 8b5e:

Sodium binding site 1 out of 1 in the Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:35.3 occ:1.00 H A:SER114 2.1 18.8 1.0 HA2 A:GLY210 2.6 19.3 0.7 HA2 A:GLY210 2.7 22.1 0.3 O A:GLY209 2.9 21.6 0.3 N A:SER114 2.9 18.4 1.0 HA A:THR113 3.1 21.2 1.0 HB2 A:LEU207 3.1 27.8 1.0 HB3 A:SER114 3.1 19.9 1.0 H A:GLY210 3.1 22.0 0.7 CA A:GLY210 3.3 19.2 0.7 O A:LEU207 3.4 38.9 1.0 HG22 A:THR113 3.5 30.2 1.0 CE1 A:TYR211 3.5 20.5 1.0 HE1 A:TYR211 3.5 20.6 1.0 CA A:GLY210 3.5 22.7 0.3 CD1 A:TYR211 3.6 19.5 1.0 N A:GLY210 3.6 22.2 0.7 CB A:SER114 3.7 19.9 1.0 HB3 A:LEU207 3.7 29.3 1.0 HD1 A:TYR211 3.7 19.4 1.0 C A:GLY210 3.7 18.9 0.7 CA A:SER114 3.7 18.1 1.0 C A:GLY210 3.7 20.2 0.3 HB2 A:SER114 3.7 19.1 1.0 H A:TYR211 3.8 18.4 1.0 CB A:LEU207 3.8 28.7 1.0 C A:THR113 3.8 17.3 1.0 CA A:THR113 3.8 21.8 1.0 C A:GLY209 3.9 25.8 0.3 O A:SER114 3.9 18.3 1.0 N A:TYR211 3.9 17.8 1.0 CZ A:TYR211 4.0 21.1 1.0 N A:GLY210 4.1 22.2 0.3 C A:SER114 4.1 18.7 1.0 HA3 A:GLY210 4.1 18.4 0.7 CG A:TYR211 4.2 18.4 1.0 O A:GLY210 4.2 19.8 0.3 HD13 A:LEU207 4.3 33.0 1.0 O A:TYR112 4.3 24.6 1.0 O A:GLY210 4.3 20.1 0.7 HA3 A:GLY210 4.3 22.4 0.3 HG1 A:THR96 4.3 18.3 0.0 CG2 A:THR113 4.3 30.3 1.0 HG22 A:THR96 4.3 23.5 1.0 C A:LEU207 4.3 35.9 1.0 HD12 A:LEU207 4.4 33.5 1.0 HG1 A:THR113 4.4 24.0 0.0 CE2 A:TYR211 4.6 19.4 1.0 OH A:TYR211 4.6 22.0 1.0 HA A:SER114 4.6 18.5 1.0 HH A:TYR211 4.6 19.0 0.0 CB A:THR113 4.6 28.5 1.0 CA A:LEU207 4.6 30.4 1.0 CD2 A:TYR211 4.7 17.4 1.0 CD1 A:LEU207 4.7 35.8 1.0 H A:LEU207 4.7 28.9 1.0 HG23 A:THR113 4.7 29.7 1.0 HA A:THR96 4.8 20.2 1.0 CG A:LEU207 4.9 27.0 1.0 H A:GLY210 4.9 22.7 0.3 N A:THR113 4.9 18.0 1.0 CA A:TYR211 4.9 17.7 1.0 C A:GLY209 4.9 24.2 0.7 C A:TYR112 5.0 20.7 1.0 O A:THR113 5.0 23.6 1.0 OG A:SER114 5.0 19.1 1.0 HA A:TYR211 5.0 17.6 1.0

J.Whittaker, A.Guskov. Exploring the Ligand Binding and Conformational Dynamics of Receptor Domain 1 of the Abc Transporter Glnpq To Be Published.